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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100835598   pentatricopeptide repeat-containing protein At4g02750 
 tae-r.2   123167530   pentatricopeptide repeat-containing protein At2g44880-like 
 tae-r.2   123148640   pentatricopeptide repeat-containing protein At2g44880 
 tae-r.2   123084447   pentatricopeptide repeat-containing protein At2g44880-like 
 hvu-r.1   123426747   pentatricopeptide repeat-containing protein At4g02750-like 
 osa-u.5   4347017   pentatricopeptide repeat-containing protein At4g02750 
 zma-u.5   103632560   pentatricopeptide repeat-containing protein 
 sbi-r.1   8065479   pentatricopeptide repeat-containing protein At4g02750 
 gma-u.5   100799232   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 sly-u.5   101259567   pentatricopeptide repeat-containing protein At3g29230-like 
 bra-r.6   103858332   pentatricopeptide repeat-containing protein At4g18840 
 vvi-u.5   100267844   putative pentatricopeptide repeat-containing protein At5g37570 
 mtr-u.5   25493557   pentatricopeptide repeat-containing protein At3g29230 
 ghi-r.1   107886382   pentatricopeptide repeat-containing protein At3g29230 
 ghi-r.1   107920181   pentatricopeptide repeat-containing protein At3g29230 
 sot-r.1   102606241   pentatricopeptide repeat-containing protein At3g29230-like 
 cit-r.1   102619133   putative pentatricopeptide repeat-containing protein At5g37570 
 nta-r.1   107823694   pentatricopeptide repeat-containing protein At2g20540 
 nta-r.1   107779926   pentatricopeptide repeat-containing protein At2g20540-like 

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Top 50 coexpressed genes to 100835598 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100835598 (bdi-r.1 coexpression data)

CoexMap"100835598"


bdiLOC100835598 | Entrez gene ID : 100835598      
Species bdi tae hvu osa zma sbi gma sly bra vvi mtr ghi sot cit nta bna cre ppo ath
Paralog 1 3 1 1 1 1 1 1 1 1 1 2 1 1 2 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003561223.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_003561223.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_003561223.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100835598
tae-r.2
for
123167530
tae-r.2
for
123148640
tae-r.2
for
123084447
hvu-r.1
for
123426747
osa-u.5
for
4347017
zma-u.5
for
103632560
sbi-r.1
for
8065479
gma-u.5
for
100799232
sly-u.5
for
101259567
bra-r.6
for
103858332
vvi-u.5
for
100267844
mtr-u.5
for
25493557
ghi-r.1
for
107886382
ghi-r.1
for
107920181
sot-r.1
for
102606241
cit-r.1
for
102619133
nta-r.1
for
107823694
nta-r.1
for
107779926


Ortholog ID: 11858
Species bdi tae tae tae hvu osa zma sbi gma sly bra vvi mtr ghi ghi sot cit nta nta
Symbol LOC100835598 LOC123167530 LOC123148640 LOC123084447 LOC123426747 LOC4347017 LOC103632560 LOC8065479 LOC100799232 LOC101259567 LOC103858332 LOC100267844 LOC25493557 LOC107886382 LOC107920181 LOC102606241 LOC102619133 LOC107823694 LOC107779926
Function* pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At2g44880-like pentatricopeptide repeat-containing protein At2g44880 pentatricopeptide repeat-containing protein At2g44880-like pentatricopeptide repeat-containing protein At4g02750-like pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230-like pentatricopeptide repeat-containing protein At4g18840 putative pentatricopeptide repeat-containing protein At5g37570 pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230-like putative pentatricopeptide repeat-containing protein At5g37570 pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein At2g20540-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00195 Photosynthesis 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100835598 123167530 123148640 123084447 123426747 4347017 103632560 8065479 100799232 101259567 103858332 100267844 25493557 107886382 107920181 102606241 102619133 107823694 107779926
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