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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100836624   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 tae-r.2   123154899   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 tae-r.2   123156546   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 tae-r.2   123164876   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 hvu-r.1   123412059   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 osa-u.5   112936032   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 zma-u.5   100277783   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 sbi-r.1   8077309   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ath-u.5   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100815191   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 sly-u.5   101261209   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 bra-r.6   103869610   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 vvi-u.5   100252831   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ppo-u.5   18106973   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ppo-u.5   7491780   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 mtr-u.5   11436185   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ghi-r.1   107950578   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ghi-r.1   107924827   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 bna-r.1   106390130   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 bna-r.1   106390123   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 bna-r.1   125608984   pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like 
 sot-r.1   102601031   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 cit-r.1   102628968   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 nta-r.1   107802656   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 nta-r.1   107760847   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 

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Top 50 coexpressed genes to 100836624 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100836624 (bdi-r.1 coexpression data)

CoexMap"100836624"


bdiLOC100836624 | Entrez gene ID : 100836624      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 1 1 1 1 2 1 2 3 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_010227899.1 [sequence] [blastp]
XP_010227900.1 [sequence] [blastp]
XP_010227901.1 [sequence] [blastp]
XP_010227902.1 [sequence] [blastp]
XP_010227903.1 [sequence] [blastp]
XP_010227904.1 [sequence] [blastp]
XP_014752855.1 [sequence] [blastp]
XP_024312374.1 [sequence] [blastp]
XP_024312375.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_010227899.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_010227900.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_010227901.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_010227902.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_010227903.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_010227904.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_014752855.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_024312374.1)
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_024312375.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_010227899.1)
chlo 7  (predict for XP_010227900.1)
chlo 7  (predict for XP_010227901.1)
chlo 7  (predict for XP_010227902.1)
chlo 7  (predict for XP_010227903.1)
chlo 7  (predict for XP_010227904.1)
chlo 7  (predict for XP_014752855.1)
chlo 7  (predict for XP_024312374.1)
chlo 7  (predict for XP_024312375.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100836624
tae-r.2
for
123154899
tae-r.2
for
123156546
tae-r.2
for
123164876
hvu-r.1
for
123412059
osa-u.5
for
112936032
zma-u.5
for
100277783
sbi-r.1
for
8077309
ath-u.5
for
EMB1270
gma-u.5
for
100815191
sly-u.5
for
101261209
bra-r.6
for
103869610
vvi-u.5
for
100252831
ppo-u.5
for
18106973
ppo-u.5
for
7491780
mtr-u.5
for
11436185
ghi-r.1
for
107950578
ghi-r.1
for
107924827
bna-r.1
for
106390130
bna-r.1
for
106390123
bna-r.1
for
125608984
sot-r.1
for
102601031
cit-r.1
for
102628968
nta-r.1
for
107802656
nta-r.1
for
107760847


Ortholog ID: 10095
Species bdi tae tae tae hvu osa zma sbi ath gma sly bra vvi ppo ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC100836624 LOC123154899 LOC123156546 LOC123164876 LOC123412059 LOC112936032 LOC100277783 LOC8077309 EMB1270 LOC100815191 LOC101261209 LOC103869610 LOC100252831 LOC18106973 LOC7491780 LOC11436185 LOC107950578 LOC107924827 LOC106390130 LOC106390123 LOC125608984 LOC102601031 LOC102628968 LOC107802656 LOC107760847
Function* pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 3
sly03040 Spliceosome 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00780 Biotin metabolism 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100836624 123154899 123156546 123164876 123412059 112936032 100277783 8077309 821336 100815191 101261209 103869610 100252831 18106973 7491780 11436185 107950578 107924827 106390130 106390123 125608984 102601031 102628968 107802656 107760847
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