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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   EMB1270   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100815191   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 vvi-u.5   100252831   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ppo-u.5   7491780   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 ppo-u.5   18106973   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 mtr-u.5   11436185   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 sly-u.5   101261209   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 osa-u.5   112936032   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 
 zma-u.5   100277783   pentatricopeptide repeat-containing protein At3g18110, chloroplastic 

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Top 50 coexpressed genes to EMB1270 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB1270 (ath-u.5 coexpression data)

CoexMap"821336"


athEMB1270 | Entrez gene ID : 821336      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 9 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031425 [list] [network] chloroplast RNA processing  (28 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_188439.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_188439.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_188439.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB1270

.
ath-r.7
for
EMB1270

.
ath-m.9
for
EMB1270

.
ath-e.2
for
EMB1270

.
ath-m.4.bio
for
EMB1270

.
ath-m.4.hor
for
EMB1270

.
ath-m.4.lig
for
EMB1270

.
ath-m.4.str
for
EMB1270

.
ath-m.4.tis
for
EMB1270

.
gma-u.5
for
100815191

.
vvi-u.5
for
100252831

.
ppo-u.5
for
7491780

.
ppo-u.5
for
18106973

.
mtr-u.5
for
11436185

.
sly-u.5
for
101261209

.
osa-u.5
for
112936032

.
zma-u.5
for
100277783

.


Ortholog ID: 10095
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol EMB1270 LOC100815191 LOC101261209 LOC112936032 LOC100277783 LOC103869610 LOC100252831 LOC18106973 LOC7491780 LOC11436185 LOC123156546 LOC123164876 LOC123412059 LOC107924827 LOC107950578 LOC125608984 LOC106390123 LOC8077309 LOC102601031 LOC102628968 LOC100836624 LOC107802656 LOC107760847
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic pentatricopeptide repeat-containing protein At3g18110, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 3
sly03040 Spliceosome 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00780 Biotin metabolism 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821336 100815191 101261209 112936032 100277783 103869610 100252831 18106973 7491780 11436185 123156546 123164876 123412059 107924827 107950578 125608984 106390123 8077309 102601031 102628968 100836624 107802656 107760847
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