ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100839035	SEC12-like protein 2
bdi-r.1	100830872	SEC12-like protein 1
bdi-r.1	100823297	SEC12-like protein 1
tae-r.2	123168366	SEC12-like protein 1
tae-r.2	123086118	SEC12-like protein 2
tae-r.2	123092167	SEC12-like protein 2
hvu-r.1	123448452	SEC12-like protein 2
hvu-r.1	123410751	SEC12-like protein 1
osa-u.5	4350905	SEC12-like protein 2
osa-u.5	4342601	SEC12-like protein 1
osa-u.5	9270427	SEC12-like protein 1
zma-u.5	100382688	uncharacterized LOC100382688
sbi-r.1	8075043	SEC12-like protein 1
sbi-r.1	8081238	SEC12-like protein 1
sbi-r.1	8066720	SEC12-like protein 2
ath-u.5	STL2P	SEC12P-like 2 protein
ath-u.5	PHF1	phosphate transporter traffic facilitator1
ath-u.5	AT5G50550	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100786727	SEC12-like protein 2
gma-u.5	100787360	SEC12-like protein 1
gma-u.5	100803472	SEC12-like protein 1
sly-u.5	101251489	SEC12-like protein 2
sly-u.5	101258215	SEC12-like protein 1
bra-r.6	103863479	SEC12-like protein 1
bra-r.6	103854073	SEC12-like protein 2
bra-r.6	103841155	SEC12-like protein 1
vvi-u.5	100251351	SEC12-like protein 1
vvi-u.5	100242169	SEC12-like protein 2
ppo-u.5	7468459	SEC12-like protein 1
ppo-u.5	7475526	SEC12-like protein 2
ppo-u.5	7482885	SEC12-like protein 2
mtr-u.5	25492998	SEC12-like protein 2
mtr-u.5	25484857	SEC12-like protein 1
ghi-r.1	121219417	SEC12-like protein 2
ghi-r.1	107938269	SEC12-like protein 2
ghi-r.1	107960314	SEC12-like protein 1
bna-r.1	106367842	SEC12-like protein 1
bna-r.1	106428036	SEC12-like protein 2
bna-r.1	125590717	SEC12-like protein 2
sot-r.1	102594823	SEC12-like protein 1
sot-r.1	102586665	SEC12-like protein 1
sot-r.1	102596955	SEC12-like protein 2
cit-r.1	102609923	SEC12-like protein 2
cit-r.1	102629777	SEC12-like protein 1
nta-r.1	107780756	SEC12-like protein 1
nta-r.1	107782035	SEC12-like protein 2
nta-r.1	107783801	SEC12-like protein 1
cre-r.1	CHLRE_03g170350v5	uncharacterized protein

Top 50 coexpressed genes to 100839035 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100839035 (bdi-r.1 coexpression data)

CoexMap"100839035"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi04141 [list] [network] Protein processing in endoplasmic reticulum (196 genes)

GO BP

GO:0003400 [list] [network] regulation of COPII vesicle coating	(6 genes)	IEA
GO:0009306 [list] [network] protein secretion	(17 genes)	IEA

GO CC

GO:0005789 [list] [network] endoplasmic reticulum membrane

(204 genes)

IEA

GO MF

GO:0005085 [list] [network] guanyl-nucleotide exchange factor activity	(38 genes)	IEA
GO:0005096 [list] [network] GTPase activator activity	(52 genes)	IEA
GO:0005515 [list] [network] protein binding	(4040 genes)	IEA

Protein

XP_003577371.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, extr 1, nucl 1, E.R. 1

(predict for XP_003577371.1)

Subcellular
localization
TargetP

mito 4, other 3

(predict for XP_003577371.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100839035	bdi-r.1 for 100830872	bdi-r.1 for 100823297	tae-r.2 for 123168366	tae-r.2 for 123086118	tae-r.2 for 123092167	hvu-r.1 for 123448452	hvu-r.1 for 123410751	osa-u.5 for 4350905	osa-u.5 for 4342601	osa-u.5 for 9270427	zma-u.5 for 100382688	sbi-r.1 for 8075043	sbi-r.1 for 8081238	sbi-r.1 for 8066720	ath-u.5 for STL2P	ath-u.5 for PHF1	ath-u.5 for AT5G50550	gma-u.5 for 100786727	gma-u.5 for 100787360	gma-u.5 for 100803472	sly-u.5 for 101251489	sly-u.5 for 101258215	bra-r.6 for 103863479	bra-r.6 for 103854073	bra-r.6 for 103841155	vvi-u.5 for 100251351	vvi-u.5 for 100242169	ppo-u.5 for 7468459	ppo-u.5 for 7475526	ppo-u.5 for 7482885	mtr-u.5 for 25492998	mtr-u.5 for 25484857	ghi-r.1 for 121219417	ghi-r.1 for 107938269	ghi-r.1 for 107960314	bna-r.1 for 106367842	bna-r.1 for 106428036	bna-r.1 for 125590717	sot-r.1 for 102594823	sot-r.1 for 102586665	sot-r.1 for 102596955	cit-r.1 for 102609923	cit-r.1 for 102629777	nta-r.1 for 107780756	nta-r.1 for 107782035	nta-r.1 for 107783801	cre-r.1 for CHLRE_03g170350v5

Ortholog

Ortholog ID: 1648

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PHF1

Function^*

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

sec12-like protein 2

SEC12-like protein 1

uncharacterized LOC110431251

phosphate transporter traffic facilitator1

Transducin/WD40 repeat-like superfamily protein

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	2
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2
bdi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	6
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
bdi00260	Glycine, serine and threonine metabolism	3
bdi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae04016	MAPK signaling pathway - plant	2
tae04070	Phosphatidylinositol signaling system	2
tae04075	Plant hormone signal transduction	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00071	Fatty acid degradation	2
hvu00410	beta-Alanine metabolism	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00020	Citrate cycle (TCA cycle)	5
zma01200	Carbon metabolism	5
zma01210	2-Oxocarboxylic acid metabolism	4
zma00785	Lipoic acid metabolism	3
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00561	Glycerolipid metabolism	2
sbi00566	Sulfoquinovose metabolism	2
sbi00999	Biosynthesis of various plant secondary metabolites	2
sbi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00740	Riboflavin metabolism	2
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04120	Ubiquitin mediated proteolysis	2
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04120	Ubiquitin mediated proteolysis	2
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma03060	Protein export	2
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly03015	mRNA surveillance pathway	2
sly03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03010	Ribosome	2
sly03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra04142	Lysosome	2
bra04626	Plant-pathogen interaction	2
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03050	Proteasome	2
bra04142	Lysosome	2
bra04626	Plant-pathogen interaction	2
bra00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	3
vvi03040	Spliceosome	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	6
ppo04145	Phagosome	6
ppo04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00710	Carbon fixation by Calvin cycle	4
ghi00020	Citrate cycle (TCA cycle)	3
ghi00270	Cysteine and methionine metabolism	3
ghi00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00710	Carbon fixation by Calvin cycle	4
ghi00020	Citrate cycle (TCA cycle)	3
ghi00270	Cysteine and methionine metabolism	3
ghi00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta04141	Protein processing in endoplasmic reticulum	2
nta00566	Sulfoquinovose metabolism	2
nta04016	MAPK signaling pathway - plant	2
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta04141	Protein processing in endoplasmic reticulum	2
nta00566	Sulfoquinovose metabolism	2
nta04016	MAPK signaling pathway - plant	2
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	9
cre03060	Protein export	2

Expression

Expression pattern

Entrez Gene ID^*

100839035

100830872

100823297

123086118

123168031

123149106

123410751

4350905

4342601

9270427

100192088

8075043

8081238

110431251

824384

835123

835135

100786727

100787360

100803472

101251489

101258215

103863479

103841155

103827587

100251351

100242169

7475526

7482885

18101333

25492998

25484857

121219417

107938269

107922614

106367842

106388843

106402892

102594823

102586665

102596955

102609923

102629777

107780756

107782035

107783801

5728946

The preparation time of this page was 0.6 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	2	3	1	3	3	3	2	3	2	3	2	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100839035 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100839035 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**