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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100832497   DNA-directed RNA polymerases IV and V subunit 2 
 bdi-r.1   100822006   DNA-directed RNA polymerases IV and V subunit 2 
 bdi-r.1   100821466   DNA-directed RNA polymerases IV and V subunit 2 
 tae-r.2   123190832   DNA-directed RNA polymerases IV and V subunit 2 
 tae-r.2   123147607   DNA-directed RNA polymerases IV and V subunit 2 
 tae-r.2   123054983   DNA-directed RNA polymerases IV and V subunit 2 
 hvu-r.1   123428203   DNA-directed RNA polymerases IV and V subunit 2-like 
 osa-u.5   4337169   DNA-directed RNA polymerases IV and V subunit 2 
 zma-u.5   100037782   required to maintain repression 7 
 zma-u.5   103641221   DNA-directed RNA polymerases IV and V subunit 2 
 sbi-r.1   8068462   DNA-directed RNA polymerases IV and V subunit 2 
 sbi-r.1   8080883   DNA-directed RNA polymerases IV and V subunit 2 
 sbi-r.1   8085255   DNA-directed RNA polymerases IV and V subunit 2 
 ath-u.5   NRPD2B   nuclear RNA polymerase D2B 
 ath-u.5   NRPD2A   nuclear RNA polymerase D2A 
 gma-u.5   100815934   DNA-directed RNA polymerases IV and V subunit 2 
 gma-u.5   100779425   DNA-directed RNA polymerases IV and V subunit 2 
 sly-u.5   778349   RNA polymerase IV subunit RPD2 
 sly-u.5   101249196   DNA-directed RNA polymerases IV and V subunit 2-like 
 bra-r.6   103869612   DNA-directed RNA polymerases IV and V subunit 2 
 vvi-u.5   100256013   DNA-directed RNA polymerases IV and V subunit 2 
 ppo-u.5   7465421   DNA-directed RNA polymerases IV and V subunit 2 
 mtr-u.5   11436034   DNA-directed RNA polymerases IV and V subunit 2 
 mtr-u.5   25480597   DNA-directed RNA polymerases IV and V subunit 2 
 ghi-r.1   107953738   DNA-directed RNA polymerases IV and V subunit 2 
 ghi-r.1   121231997   DNA-directed RNA polymerase D subunit 2b 
 bna-r.1   106390128   DNA-directed RNA polymerases IV and V subunit 2 
 bna-r.1   106390129   DNA-directed RNA polymerases IV and V subunit 2 
 sot-r.1   102583937   DNA-directed RNA polymerases IV and V subunit 2-like 
 sot-r.1   102596445   DNA-directed RNA polymerases IV and V subunit 2-like 
 cit-r.1   102625916   DNA-directed RNA polymerases IV and V subunit 2-like 
 nta-r.1   107802798   DNA-directed RNA polymerases IV and V subunit 2 
 nta-r.1   107760305   DNA-directed RNA polymerases IV and V subunit 2 

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Top 50 coexpressed genes to 100832497 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100832497 (bdi-r.1 coexpression data)

CoexMap"100839312"


bdiLOC100839312 | Entrez gene ID : 100839312      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 1 1 2 3 2 2 2 1 1 1 2 2 2 2 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03020 [list] [network] RNA polymerase (60 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (230 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (29 genes)  IEA  
GO MF
GO:0032549 [list] [network] ribonucleoside binding  (8 genes)  IEA  
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (34 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1744 genes)  IEA  
Protein XP_003571431.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_003571431.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003571431.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100832497
bdi-r.1
for
100822006
bdi-r.1
for
100821466
tae-r.2
for
123190832
tae-r.2
for
123147607
tae-r.2
for
123054983
hvu-r.1
for
123428203
osa-u.5
for
4337169
zma-u.5
for
100037782
zma-u.5
for
103641221
sbi-r.1
for
8068462
sbi-r.1
for
8080883
sbi-r.1
for
8085255
ath-u.5
for
NRPD2B
ath-u.5
for
NRPD2A
gma-u.5
for
100815934
gma-u.5
for
100779425
sly-u.5
for
778349
sly-u.5
for
101249196
bra-r.6
for
103869612
vvi-u.5
for
100256013
ppo-u.5
for
7465421
mtr-u.5
for
11436034
mtr-u.5
for
25480597
ghi-r.1
for
107953738
ghi-r.1
for
121231997
bna-r.1
for
106390128
bna-r.1
for
106390129
sot-r.1
for
102583937
sot-r.1
for
102596445
cit-r.1
for
102625916
nta-r.1
for
107802798
nta-r.1
for
107760305


Ortholog ID: 5111
Species bdi bdi tae tae tae hvu osa zma zma sbi sbi sbi ath ath gma gma sly sly bra vvi ppo mtr mtr ghi ghi bna bna sot sot cit nta nta
Symbol LOC100832497 LOC100821466 LOC123190832 LOC123147607 LOC123047174 LOC123428203 LOC4337169 LOC100037782 LOC103641221 LOC8068462 LOC8080883 LOC8085255 NRPD2B NRPD2A LOC100815934 LOC100779425 LOC778349 LOC101249196 LOC103869612 LOC100256013 LOC7465421 LOC11436034 LOC25480597 LOC107953738 LOC121231997 LOC106390128 LOC106390129 LOC102583937 LOC102596445 LOC102625916 LOC107802798 LOC107760305
Function* DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 required to maintain repression 7 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 nuclear RNA polymerase D2B nuclear RNA polymerase D2A DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 RNA polymerase IV subunit RPD2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerase D subunit 2b DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03410 Base excision repair 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 8
sly00520 Amino sugar and nucleotide sugar metabolism 3
sly01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03082 ATP-dependent chromatin remodeling 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100832497 100821466 123190832 123147607 123047174 123428203 4337169 100037782 103641221 8068462 8080883 8085255 821334 821960 100815934 100779425 778349 101249196 103869612 100256013 7465421 11436034 25480597 107953738 121231997 106390128 106390129 102583937 102596445 102625916 107802798 107760305
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