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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121231997   DNA-directed RNA polymerase D subunit 2b 
 ath-u.5   NRPD2B   nuclear RNA polymerase D2B 
 ath-u.5   NRPD2A   nuclear RNA polymerase D2A 
 gma-u.5   100815934   DNA-directed RNA polymerases IV and V subunit 2 
 gma-u.5   100779425   DNA-directed RNA polymerases IV and V subunit 2 
 vvi-u.5   100256013   DNA-directed RNA polymerases IV and V subunit 2 
 ppo-u.5   7465421   DNA-directed RNA polymerases IV and V subunit 2 
 mtr-u.5   25480597   DNA-directed RNA polymerases IV and V subunit 2 
 mtr-u.5   11436034   DNA-directed RNA polymerases IV and V subunit 2 
 sly-u.5   778349   RNA polymerase IV subunit RPD2 
 sly-u.5   101249196   DNA-directed RNA polymerases IV and V subunit 2-like 
 osa-u.5   4337169   DNA-directed RNA polymerases IV and V subunit 2 
 zma-u.5   103641221   DNA-directed RNA polymerases IV and V subunit 2 
 zma-u.5   100037782   required to maintain repression 7 

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Top 50 coexpressed genes to 121231997 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121231997 (ghi-r.1 coexpression data)

CoexMap"121231997"


ghiLOC121231997 | Entrez gene ID : 121231997    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 2 2 1 1 2 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03020 [list] [network] RNA polymerase (126 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (617 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (68 genes)  IEA  
GO MF
GO:0032549 [list] [network] ribonucleoside binding  (11 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_040973178.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  cysk 1,  golg 1,  golg_plas 1,  E.R._vacu 1,  cyto_pero 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_040973178.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040973178.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121231997
ath-u.5
for
NRPD2B
ath-u.5
for
NRPD2A
gma-u.5
for
100815934
gma-u.5
for
100779425
vvi-u.5
for
100256013
ppo-u.5
for
7465421
mtr-u.5
for
25480597
mtr-u.5
for
11436034
sly-u.5
for
778349
sly-u.5
for
101249196
osa-u.5
for
4337169
zma-u.5
for
103641221
zma-u.5
for
100037782


Ortholog ID: 5111
Species ghi ghi ath ath bra bna bna cit gma gma vvi ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi sbi bdi
Symbol LOC107953738 LOC121231997 NRPD2B NRPD2A LOC103869612 LOC106390128 LOC106390129 LOC102625916 LOC100815934 LOC100779425 LOC100256013 LOC7465421 LOC11436034 LOC25480597 LOC778349 LOC101249196 LOC102596445 LOC102583937 LOC107802798 LOC107760305 LOC4337169 LOC103641221 LOC100037782 LOC123047174 LOC123190832 LOC123428203 LOC8085255 LOC8068462 LOC100821466
Function* DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerase D subunit 2b nuclear RNA polymerase D2B nuclear RNA polymerase D2A DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 RNA polymerase IV subunit RPD2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 required to maintain repression 7 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03082 ATP-dependent chromatin remodeling 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 8
sly00520 Amino sugar and nucleotide sugar metabolism 3
sly01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03410 Base excision repair 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107953738 121231997 821334 821960 103869612 106390128 106390129 102625916 100815934 100779425 100256013 7465421 11436034 25480597 778349 101249196 102596445 102583937 107802798 107760305 4337169 103641221 100037782 123047174 123190832 123428203 8085255 8068462 100821466
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