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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100840180   transcription factor IIIB 90 kDa subunit 
 bdi-r.1   100842802   transcription factor IIIB 60 kDa subunit 
 bdi-r.1   100825257   uncharacterized LOC100825257 
 tae-r.2   123112095   transcription factor IIIB 90 kDa subunit 
 tae-r.2   123183045   transcription factor IIIB 60 kDa subunit 
 tae-r.2   123091364   transcription factor IIIB 60 kDa subunit 
 hvu-r.1   123442888   transcription factor IIIB 60 kDa subunit-like 
 osa-u.5   4338362   transcription factor IIIB 60 kDa subunit 
 zma-u.5   103635274   transcription factor IIIB 90 kDa subunit-like 
 zma-u.5   100274140   Cyclin/Brf1-like TBP-binding protein 
 sbi-r.1   8068996   transcription factor IIIB 90 kDa subunit 
 ath-u.5   AT2G45100   Cyclin/Brf1-like TBP-binding protein 
 ath-u.5   AT3G09360   Cyclin/Brf1-like TBP-binding protein 
 gma-u.5   100817609   transcription factor IIIB 90 kDa subunit 
 gma-u.5   100789154   transcription factor IIIB 90 kDa subunit 
 sly-u.5   101249300   transcription factor IIIB 60 kDa subunit 
 bra-r.6   103859301   transcription factor IIIB 60 kDa subunit 
 bra-r.6   103859299   transcription factor IIIB 60 kDa subunit 
 vvi-u.5   100263800   uncharacterized LOC100263800 
 ppo-u.5   7481510   transcription factor IIIB 60 kDa subunit 
 ppo-u.5   18095052   transcription factor IIIB 60 kDa subunit 
 mtr-u.5   11436961   transcription factor IIIB 90 kDa subunit 
 mtr-u.5   25495815   transcription factor IIIB 90 kDa subunit 
 ghi-r.1   107916695   transcription factor IIIB 60 kDa subunit 
 ghi-r.1   107912745   transcription factor IIIB 90 kDa subunit 
 ghi-r.1   107893131   transcription factor IIIB 90 kDa subunit 
 bna-r.1   106439200   transcription factor IIIB 60 kDa subunit-like 
 bna-r.1   106388955   transcription factor IIIB 60 kDa subunit-like 
 sot-r.1   102590442   transcription factor IIIB 60 kDa subunit 
 sot-r.1   102583078   transcription factor IIIB 60 kDa subunit-like 
 cit-r.1   102618916   uncharacterized LOC102618916 
 nta-r.1   107825626   transcription factor IIIB 60 kDa subunit 
 nta-r.1   107770534   transcription factor IIIB 60 kDa subunit 
 nta-r.1   107763335   transcription factor IIIB 60 kDa subunit-like 
 cre-r.1   CHLRE_06g256420v5   uncharacterized protein 

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Top 50 coexpressed genes to 100840180 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100840180 (bdi-r.1 coexpression data)

CoexMap"100840180"


bdiLOC100840180 | Entrez gene ID : 100840180    
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 1 1 2 1 2 2 1 2 1 2 2 3 2 2 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006383 [list] [network] transcription by RNA polymerase III  (26 genes)  IEA  
GO:0070897 [list] [network] transcription preinitiation complex assembly  (28 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (71 genes)  IEA  
GO CC
GO:0000126 [list] [network] transcription factor TFIIIB complex  (5 genes)  IEA  
GO:0097550 [list] [network] transcription preinitiation complex  (13 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2880 genes)  IEA  
GO MF
GO:0000995 [list] [network] RNA polymerase III general transcription initiation factor activity  (4 genes)  IEA  
GO:0001006 [list] [network] RNA polymerase III type 3 promoter sequence-specific DNA binding  (5 genes)  IEA  
GO:0017025 [list] [network] TBP-class protein binding  (19 genes)  IEA  
Protein XP_014752997.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cysk 1  (predict for XP_014752997.1)
Subcellular
localization
TargetP
other 9  (predict for XP_014752997.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100840180
bdi-r.1
for
100842802
bdi-r.1
for
100825257
tae-r.2
for
123112095
tae-r.2
for
123183045
tae-r.2
for
123091364
hvu-r.1
for
123442888
osa-u.5
for
4338362
zma-u.5
for
103635274
zma-u.5
for
100274140
sbi-r.1
for
8068996
ath-u.5
for
AT2G45100
ath-u.5
for
AT3G09360
gma-u.5
for
100817609
gma-u.5
for
100789154
sly-u.5
for
101249300
bra-r.6
for
103859301
bra-r.6
for
103859299
vvi-u.5
for
100263800
ppo-u.5
for
7481510
ppo-u.5
for
18095052
mtr-u.5
for
11436961
mtr-u.5
for
25495815
ghi-r.1
for
107916695
ghi-r.1
for
107912745
ghi-r.1
for
107893131
bna-r.1
for
106439200
bna-r.1
for
106388955
sot-r.1
for
102590442
sot-r.1
for
102583078
cit-r.1
for
102618916
nta-r.1
for
107825626
nta-r.1
for
107770534
nta-r.1
for
107763335
cre-r.1
for
CHLRE_06g256420v5


Ortholog ID: 2873
Species bdi bdi bdi tae tae hvu osa zma zma zma sbi ath ath gma gma sly bra bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna sot sot cit nta nta nta cre
Symbol LOC100840180 LOC100842802 LOC100825257 LOC123077408 LOC123103871 LOC123442888 LOC4338362 LOC103635274 LOC103630672 LOC109946121 LOC8068996 AT3G09360 AT1G30455 LOC100817609 LOC100789154 LOC101249300 LOC103859301 LOC103859299 LOC100263800 LOC7481510 LOC18095052 LOC11436961 LOC25495815 LOC107912745 LOC107893131 LOC107922495 LOC106439200 LOC106439194 LOC102590442 LOC102583078 LOC102618916 LOC107763335 LOC107759451 LOC107766432 CHLRE_06g256420v5
Function* transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit uncharacterized LOC100825257 transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit-like transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit Cyclin/Brf1-like TBP-binding protein cyclin/Brf1-like TBP-binding domain-containing protein transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit uncharacterized LOC100263800 transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like uncharacterized LOC102618916 transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 2
bdi00564 Glycerophospholipid metabolism 2
bdi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 4
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 3
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00053 Ascorbate and aldarate metabolism 4
zma00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
mtr03010 Ribosome 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100840180 100842802 100825257 123077408 123103871 123442888 4338362 103635274 103630672 109946121 8068996 820092 6240845 100817609 100789154 101249300 103859301 103859299 100263800 7481510 18095052 11436961 25495815 107912745 107893131 107922495 106439200 106439194 102590442 102583078 102618916 107763335 107759451 107766432 5722115
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