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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g256420v5   uncharacterized protein 
 ath-u.5   AT2G45100   Cyclin/Brf1-like TBP-binding protein 
 ath-u.5   AT3G09360   Cyclin/Brf1-like TBP-binding protein 
 gma-u.5   100817609   transcription factor IIIB 90 kDa subunit 
 gma-u.5   100789154   transcription factor IIIB 90 kDa subunit 
 sly-u.5   101249300   transcription factor IIIB 60 kDa subunit 
 osa-u.5   4338362   transcription factor IIIB 60 kDa subunit 
 zma-u.5   109946121   transcription factor IIIB 90 kDa subunit 
 vvi-u.5   100263800   uncharacterized LOC100263800 
 ppo-u.5   18095052   transcription factor IIIB 60 kDa subunit 
 ppo-u.5   7481510   transcription factor IIIB 60 kDa subunit 
 mtr-u.5   11436961   transcription factor IIIB 90 kDa subunit 
 mtr-u.5   25495815   transcription factor IIIB 90 kDa subunit 

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Top 50 coexpressed genes to CHLRE_06g256420v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g256420v5 (cre-r.1 coexpression data)

CoexMap"5722115"


creCHLRE_06g256420v5 | Entrez gene ID : 5722115    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070897 [list] [network] transcription preinitiation complex assembly  (14 genes)  IEA  
GO:0006383 [list] [network] transcription by RNA polymerase III  (15 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (39 genes)  IEA  
GO CC
GO:0000126 [list] [network] transcription factor TFIIIB complex  (2 genes)  IEA  
GO:0097550 [list] [network] transcription preinitiation complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0000995 [list] [network] RNA polymerase III general transcription initiation factor activity  (1 genes)  IEA  
GO:0001006 [list] [network] RNA polymerase III type 3 promoter sequence-specific DNA binding  (2 genes)  IEA  
GO:0017025 [list] [network] TBP-class protein binding  (8 genes)  IEA  
Protein XP_001696367.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  pero 1  (predict for XP_001696367.2)
Subcellular
localization
TargetP
other 8,  scret 3  (predict for XP_001696367.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g256420v5

.
ath-u.5
for
AT2G45100

.
ath-u.5
for
AT3G09360

.
gma-u.5
for
100817609

.
gma-u.5
for
100789154

.
sly-u.5
for
101249300

.
osa-u.5
for
4338362

.
zma-u.5
for
109946121

.
vvi-u.5
for
100263800

.
ppo-u.5
for
18095052

.
ppo-u.5
for
7481510

.
mtr-u.5
for
11436961

.
mtr-u.5
for
25495815

.


Ortholog ID: 2873
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol AT1G30455 LOC100789154 LOC100817609 LOC101249300 LOC4338362 LOC109946121 LOC103635274 LOC103859299 LOC103859301 LOC100263800 LOC7481510 LOC18095052 LOC25495815 LOC11436961 LOC123077408 LOC123442888 LOC107912745 LOC107922495 LOC106439194 LOC106439200 CHLRE_06g256420v5 LOC8068996 LOC102583078 LOC102590442 LOC102618916 LOC100842802 LOC100825257 LOC107759451 LOC107763335
Function* cyclin/Brf1-like TBP-binding domain-containing protein transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit-like transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit uncharacterized LOC100263800 transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like uncharacterized protein transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit uncharacterized LOC102618916 transcription factor IIIB 60 kDa subunit uncharacterized LOC100825257 transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 3
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
mtr03010 Ribosome 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 4
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 6240845 100789154 100817609 101249300 4338362 109946121 103635274 103859299 103859301 100263800 7481510 18095052 25495815 11436961 123077408 123442888 107912745 107922495 106439194 106439200 5722115 8068996 102583078 102590442 102618916 100842802 100825257 107759451 107763335
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