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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100841100   DNA repair protein recA homolog 1, chloroplastic 
 tae-r.2   123122736   DNA repair protein recA homolog 1, chloroplastic 
 tae-r.2   123113227   DNA repair protein recA homolog 1, chloroplastic 
 tae-r.2   123104926   DNA repair protein recA homolog 1, chloroplastic 
 hvu-r.1   123452124   DNA repair protein recA homolog 1, chloroplastic 
 osa-u.5   4333537   DNA repair protein recA homolog 1, chloroplastic 
 zma-u.5   100282426   protein recA 
 sbi-r.1   8062225   DNA repair protein recA homolog 1, chloroplastic 
 ath-u.5   RECA1   recA DNA recombination family protein 
 gma-u.5   100788534   DNA repair protein recA homolog 1, chloroplastic 
 sly-u.5   101261637   DNA repair protein recA homolog 1, chloroplastic 
 bra-r.6   103853162   DNA repair protein recA homolog 1, chloroplastic 
 bra-r.6   103830499   DNA repair protein recA homolog 1, chloroplastic 
 vvi-u.5   100249133   DNA repair protein recA homolog 1, chloroplastic 
 ppo-u.5   18095763   DNA repair protein recA homolog 1, chloroplastic 
 mtr-u.5   25502471   DNA repair protein recA homolog 1, chloroplastic 
 ghi-r.1   121213739   DNA repair protein recA homolog 1, chloroplastic 
 ghi-r.1   121203737   DNA repair protein recA homolog 1, chloroplastic 
 bna-r.1   106405790   DNA repair protein recA homolog 1, chloroplastic-like 
 bna-r.1   106381533   DNA repair protein recA homolog 1, chloroplastic 
 bna-r.1   106353418   DNA repair protein recA homolog 1, chloroplastic-like 
 sot-r.1   102585921   DNA repair protein recA homolog 1, chloroplastic 
 cit-r.1   102626696   DNA repair protein recA homolog 1, chloroplastic 
 nta-r.1   107816977   DNA repair protein recA homolog 1, chloroplastic 
 nta-r.1   107810192   DNA repair protein recA homolog 1, chloroplastic 
 cre-r.1   CHLRE_07g314650v5   uncharacterized protein 

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Top 50 coexpressed genes to 100841100 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100841100 (bdi-r.1 coexpression data)

CoexMap"100841100"


bdiLOC100841100 | Entrez gene ID : 100841100      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 1 1 2 1 1 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03440 [list] [network] Homologous recombination (63 genes)
GO BP
GO:0006281 [list] [network] DNA repair  (287 genes)  IEA  
GO CC
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (65 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (417 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1995 genes)  IEA  
Protein XP_003562018.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_003562018.1)
Subcellular
localization
TargetP
chlo 8,  mito 8  (predict for XP_003562018.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100841100
tae-r.2
for
123122736
tae-r.2
for
123113227
tae-r.2
for
123104926
hvu-r.1
for
123452124
osa-u.5
for
4333537
zma-u.5
for
100282426
sbi-r.1
for
8062225
ath-u.5
for
RECA1
gma-u.5
for
100788534
sly-u.5
for
101261637
bra-r.6
for
103853162
bra-r.6
for
103830499
vvi-u.5
for
100249133
ppo-u.5
for
18095763
mtr-u.5
for
25502471
ghi-r.1
for
121213739
ghi-r.1
for
121203737
bna-r.1
for
106405790
bna-r.1
for
106381533
bna-r.1
for
106353418
sot-r.1
for
102585921
cit-r.1
for
102626696
nta-r.1
for
107816977
nta-r.1
for
107810192
cre-r.1
for
CHLRE_07g314650v5


Ortholog ID: 8316
Species bdi tae tae tae hvu osa zma sbi ath gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC100841100 LOC123122736 LOC123113227 LOC123104926 LOC123452124 LOC4333537 LOC100282426 LOC8062225 RECA1 LOC100788534 LOC101261637 LOC103853162 LOC103830499 LOC100249133 LOC18095763 LOC25502471 LOC121213739 LOC121203737 LOC106353418 LOC106381457 LOC125597331 LOC102585921 LOC102626696 LOC107816977 LOC107810192 CHLRE_07g314650v5
Function* DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic protein recA DNA repair protein recA homolog 1, chloroplastic recA DNA recombination family protein DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic-like DNA repair protein recA homolog 1, chloroplastic-like DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03440 Homologous recombination 3
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 2
osa00470 D-Amino acid metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00061 Fatty acid biosynthesis 2
sbi00780 Biotin metabolism 2
sbi01212 Fatty acid metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100841100 123122736 123113227 123104926 123452124 4333537 100282426 8062225 844246 100788534 101261637 103853162 103830499 100249133 18095763 25502471 121213739 121203737 106353418 106381457 125597331 102585921 102626696 107816977 107810192 5726340
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