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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100846455   cleavage and polyadenylation specificity factor subunit 3-I 
 bdi-r.1   100824755   cleavage and polyadenylation specificity factor subunit 3-I 
 tae-r.2   123113071   cleavage and polyadenylation specificity factor subunit 3-I 
 tae-r.2   123087530   cleavage and polyadenylation specificity factor subunit 3-I 
 tae-r.2   123114298   cleavage and polyadenylation specificity factor subunit 3-I 
 hvu-r.1   123451948   cleavage and polyadenylation specificity factor subunit 3-I-like 
 hvu-r.1   123395178   cleavage and polyadenylation specificity factor subunit 3-I-like 
 osa-u.5   4334816   cleavage and polyadenylation specificity factor subunit 3-I 
 zma-u.5   100285156   cleavage and polyadenylation specificity factor, 73 kDa subunit 
 zma-u.5   100279987   uncharacterized LOC100279987 
 sbi-r.1   8061396   cleavage and polyadenylation specificity factor subunit 3-I 
 ath-u.5   CPSF73-I   cleavage and polyadenylation specificity factor 73-I 
 gma-u.5   100813876   cleavage and polyadenylation specificity factor subunit 3-I 
 gma-u.5   100806136   cleavage and polyadenylation specificity factor subunit 3-I 
 sly-u.5   101265747   cleavage and polyadenylation specificity factor subunit 3-I 
 bra-r.6   103830284   cleavage and polyadenylation specificity factor subunit 3-I 
 vvi-u.5   100266252   cleavage and polyadenylation specificity factor subunit 3-I 
 vvi-u.5   100261042   cleavage and polyadenylation specificity factor subunit 3-I 
 ppo-u.5   7482439   cleavage and polyadenylation specificity factor subunit 3-I 
 ppo-u.5   7482440   cleavage and polyadenylation specificity factor subunit 3-I 
 mtr-u.5   11424192   cleavage and polyadenylation specificity factor subunit 3-I 
 ghi-r.1   107894243   cleavage and polyadenylation specificity factor subunit 3-I 
 ghi-r.1   121212195   cleavage and polyadenylation specificity factor subunit 3-I 
 bna-r.1   106422498   cleavage and polyadenylation specificity factor subunit 3-I 
 bna-r.1   106406377   cleavage and polyadenylation specificity factor subunit 3-I 
 sot-r.1   102582676   cleavage and polyadenylation specificity factor subunit 3-I 
 cit-r.1   102631022   cleavage and polyadenylation specificity factor subunit 3-I-like 
 cit-r.1   102606622   cleavage and polyadenylation specificity factor subunit 3-I 
 nta-r.1   107816413   cleavage and polyadenylation specificity factor subunit 3-I 
 nta-r.1   142171428   cleavage and polyadenylation specificity factor subunit 3-I-like 
 cre-r.1   CHLRE_12g498050v5   uncharacterized protein 

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Top 50 coexpressed genes to 100846455 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100846455 (bdi-r.1 coexpression data)

CoexMap"100846455"


bdiLOC100846455 | Entrez gene ID : 100846455      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 1 2 1 1 2 1 1 2 2 1 2 2 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03015 [list] [network] mRNA surveillance pathway (130 genes)
GO BP
GO:0006398 [list] [network] mRNA 3'-end processing by stem-loop binding and cleavage  (4 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (14 genes)  IEA  
GO MF
GO:0008409 [list] [network] 5'-3' exonuclease activity  (19 genes)  IEA  
GO:0004521 [list] [network] RNA endonuclease activity  (75 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
Protein XP_003559115.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  cyto_nucl 3,  nucl 2,  plas 2,  chlo 1,  mito_plas 1  (predict for XP_003559115.2)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_003559115.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100846455
bdi-r.1
for
100824755
tae-r.2
for
123113071
tae-r.2
for
123087530
tae-r.2
for
123114298
hvu-r.1
for
123451948
hvu-r.1
for
123395178
osa-u.5
for
4334816
zma-u.5
for
100285156
zma-u.5
for
100279987
sbi-r.1
for
8061396
ath-u.5
for
CPSF73-I
gma-u.5
for
100813876
gma-u.5
for
100806136
sly-u.5
for
101265747
bra-r.6
for
103830284
vvi-u.5
for
100266252
vvi-u.5
for
100261042
ppo-u.5
for
7482439
ppo-u.5
for
7482440
mtr-u.5
for
11424192
ghi-r.1
for
107894243
ghi-r.1
for
121212195
bna-r.1
for
106422498
bna-r.1
for
106406377
sot-r.1
for
102582676
cit-r.1
for
102631022
cit-r.1
for
102606622
nta-r.1
for
107816413
nta-r.1
for
142171428
cre-r.1
for
CHLRE_12g498050v5


Ortholog ID: 6427
Species bdi bdi tae tae tae hvu hvu osa zma zma sbi ath gma gma sly bra vvi vvi ppo ppo mtr ghi ghi bna bna sot cit cit nta nta cre
Symbol LOC100846455 LOC100824755 LOC123113071 LOC123114298 LOC123122590 LOC123451948 LOC123395178 LOC4334816 LOC100285156 LOC100279987 LOC8061396 CPSF73-I LOC100813876 LOC100806136 LOC101265747 LOC103830284 LOC100266252 LOC100261042 LOC7482439 LOC7482440 LOC11424192 LOC107894243 LOC121212195 LOC106422498 LOC106406377 LOC102582676 LOC102631022 LOC102606622 LOC107816413 LOC142171428 CHLRE_12g498050v5
Function* cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor, 73 kDa subunit uncharacterized LOC100279987 cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor 73-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 3
sly03410 Base excision repair 3
sly03013 Nucleocytoplasmic transport 3
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03008 Ribosome biogenesis in eukaryotes 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100846455 100824755 123113071 123114298 123122590 123451948 123395178 4334816 100285156 100279987 8061396 842393 100813876 100806136 101265747 103830284 100266252 100261042 7482439 7482440 11424192 107894243 121212195 106422498 106406377 102582676 102631022 102606622 107816413 142171428 5727892
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