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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g498050v5   uncharacterized protein 
 ath-u.5   CPSF73-I   cleavage and polyadenylation specificity factor 73-I 
 gma-u.5   100813876   cleavage and polyadenylation specificity factor subunit 3-I 
 gma-u.5   100806136   cleavage and polyadenylation specificity factor subunit 3-I 
 sly-u.5   101265747   cleavage and polyadenylation specificity factor subunit 3-I 
 osa-u.5   4334816   cleavage and polyadenylation specificity factor subunit 3-I 
 zma-u.5   100285156   cleavage and polyadenylation specificity factor, 73 kDa subunit 
 zma-u.5   100279987   uncharacterized LOC100279987 
 vvi-u.5   100266252   cleavage and polyadenylation specificity factor subunit 3-I 
 vvi-u.5   100261042   cleavage and polyadenylation specificity factor subunit 3-I 
 ppo-u.5   7482440   cleavage and polyadenylation specificity factor subunit 3-I 
 ppo-u.5   7482439   cleavage and polyadenylation specificity factor subunit 3-I 
 mtr-u.5   11424192   cleavage and polyadenylation specificity factor subunit 3-I 

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Top 50 coexpressed genes to CHLRE_12g498050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g498050v5 (cre-r.1 coexpression data)

CoexMap"5727892"


creCHLRE_12g498050v5 | Entrez gene ID : 5727892      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03015 [list] [network] mRNA surveillance pathway (40 genes)
GO BP
GO:0006398 [list] [network] mRNA 3'-end processing by stem-loop binding and cleavage  (6 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (14 genes)  IEA  
GO MF
GO:0008409 [list] [network] 5'-3' exonuclease activity  (11 genes)  IEA  
GO:0004521 [list] [network] RNA endonuclease activity  (30 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042918329.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  mito 3,  pero 2,  chlo_mito 2  (predict for XP_042918329.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042918329.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g498050v5

.
ath-u.5
for
CPSF73-I

.
gma-u.5
for
100813876

.
gma-u.5
for
100806136

.
sly-u.5
for
101265747

.
osa-u.5
for
4334816

.
zma-u.5
for
100285156

.
zma-u.5
for
100279987

.
vvi-u.5
for
100266252

.
vvi-u.5
for
100261042

.
ppo-u.5
for
7482440

.
ppo-u.5
for
7482439

.
mtr-u.5
for
11424192

.


Ortholog ID: 6427
Species ath gma gma sly osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit cit bdi bdi nta nta
Symbol CPSF73-I LOC100813876 LOC100806136 LOC101265747 LOC4334816 LOC100279987 LOC100285156 LOC103830284 LOC100266252 LOC100261042 LOC7482439 LOC7482440 LOC11424192 LOC123114298 LOC123113071 LOC123451948 LOC123395178 LOC121212195 LOC107894243 LOC106422498 LOC106406377 CHLRE_12g498050v5 LOC8061396 LOC102582676 LOC102606622 LOC102631022 LOC100846455 LOC100824755 LOC142171428 LOC107816413
Function* cleavage and polyadenylation specificity factor 73-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I uncharacterized LOC100279987 cleavage and polyadenylation specificity factor, 73 kDa subunit cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I uncharacterized protein cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I cleavage and polyadenylation specificity factor subunit 3-I-like cleavage and polyadenylation specificity factor subunit 3-I
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 3
sly03410 Base excision repair 3
sly03013 Nucleocytoplasmic transport 3
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03008 Ribosome biogenesis in eukaryotes 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842393 100813876 100806136 101265747 4334816 100279987 100285156 103830284 100266252 100261042 7482439 7482440 11424192 123114298 123113071 123451948 123395178 121212195 107894243 106422498 106406377 5727892 8061396 102582676 102606622 102631022 100846455 100824755 142171428 107816413
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