ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100853705	uncharacterized LOC100853705
vvi-r.5	100853705	uncharacterized LOC100853705
vvi-u.5	100244351	uncharacterized LOC100244351
ath-u.5	AT1G48170	proteasome assembly chaperone
gma-u.5	100500240	uncharacterized LOC100500240
bra-r.6	103871490	proteasome assembly chaperone 4
ppo-u.5	7498226	uncharacterized LOC7498226
mtr-u.5	25486615	uncharacterized LOC25486615
ghi-r.1	107935105	uncharacterized LOC107935105
ghi-r.1	107931489	proteasome assembly chaperone 4
bna-r.1	106404615	proteasome assembly chaperone 4
bna-r.1	106346405	proteasome assembly chaperone 4-like
sly-u.5	101246538	PAC4 domain-containing protein
sot-r.1	102599927	uncharacterized LOC102599927
nta-r.1	107773607	uncharacterized LOC107773607
nta-r.1	107774634	uncharacterized LOC107774634
osa-u.5	4351683	uncharacterized LOC4351683
zma-u.5	100278713	uncharacterized LOC100278713
zma-u.5	100217088	uncharacterized LOC100217088
tae-r.2	123104575	proteasome assembly chaperone 4
tae-r.2	123116670	proteasome assembly chaperone 4
hvu-r.1	123397528	proteasome assembly chaperone 4
sbi-r.1	8054960	proteasome assembly chaperone 4
sbi-r.1	8054113	proteasome assembly chaperone 4
bdi-r.1	100845545	proteasome assembly chaperone 4
cre-r.1	CHLRE_04g216300v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0043248 [list] [network] proteasome assembly

(9 genes)

IEA

GO CC

GO MF

Protein

XP_003632004.1 [sequence] [blastp]
XP_059592713.1 [sequence] [blastp]
XP_059592714.1 [sequence] [blastp]
XP_059592715.1 [sequence] [blastp]

Subcellular
localization
wolf

cysk 7, cyto 1, chlo 1, nucl 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_003632004.1)
cysk 7, cyto 1, chlo 1, nucl 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_059592713.1)
cyto 6, cysk 3	(predict for XP_059592714.1)
cyto 6, cysk 3	(predict for XP_059592715.1)

Subcellular
localization
TargetP

other 9	(predict for XP_003632004.1)
other 9	(predict for XP_059592713.1)
other 9	(predict for XP_059592714.1)
other 9	(predict for XP_059592715.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100853705	vvi-r.5 for 100853705	vvi-u.5 for 100244351	ath-u.5 for AT1G48170	gma-u.5 for 100500240	bra-r.6 for 103871490	ppo-u.5 for 7498226	mtr-u.5 for 25486615	ghi-r.1 for 107935105	ghi-r.1 for 107931489	bna-r.1 for 106404615	bna-r.1 for 106346405	sly-u.5 for 101246538	sot-r.1 for 102599927	nta-r.1 for 107773607	nta-r.1 for 107774634	osa-u.5 for 4351683	zma-u.5 for 100278713	zma-u.5 for 100217088	tae-r.2 for 123104575	tae-r.2 for 123116670	hvu-r.1 for 123397528	sbi-r.1 for 8054960	sbi-r.1 for 8054113	bdi-r.1 for 100845545	cre-r.1 for CHLRE_04g216300v5

Ortholog

Ortholog ID: 9251

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100853705

uncharacterized LOC100244351

proteasome assembly chaperone

uncharacterized LOC100500240

proteasome assembly chaperone 4

uncharacterized LOC7498226

uncharacterized LOC25486615

uncharacterized LOC107935105

proteasome assembly chaperone 4

proteasome assembly chaperone 4-like

PAC4 domain-containing protein

uncharacterized LOC102599927

uncharacterized LOC107773607

uncharacterized LOC107774634

uncharacterized LOC4351683

uncharacterized LOC100278713

uncharacterized LOC100217088

proteasome assembly chaperone 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2
vvi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	2
ath04144	Endocytosis	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7
gma03008	Ribosome biogenesis in eukaryotes	5
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	11
ghi03040	Spliceosome	4
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna03040	Spliceosome	4
bna00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	3
sly03010	Ribosome	2
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	4
osa03040	Spliceosome	4
osa03030	DNA replication	3
osa03410	Base excision repair	3
osa03430	Mismatch repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4
zma03040	Spliceosome	3
zma03018	RNA degradation	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae00230	Purine metabolism	3
tae00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	3
hvu01240	Biosynthesis of cofactors	2
hvu03018	RNA degradation	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03015	mRNA surveillance pathway	3
sbi03013	Nucleocytoplasmic transport	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	3

Expression

Expression pattern

Entrez Gene ID^*

100853705

100244351

841236

100500240

103871490

7498226

25486615

107935105

107931489

106404615

106346405

101246538

102599927

107773607

107774634

4351683

100278713

100217088

123104575

123116670

123397528

8054960

8054113

100845545

5724251

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100853705 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100853705 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	cit
Paralog	3	1	1	1	1	1	2	2	1	1	2	1	2	2	1	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100853705 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100853705 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**