ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	Arf/Xyl4	alpha-L-arabinofuranosidase/beta-xylosidase
sly-r.6	Arf/Xyl4	alpha-L-arabinofuranosidase/beta-xylosidase
sly-u.5	Arf/Xyl3	alpha-L-arabinofuranosidase/beta-xylosidase
sot-r.1	102598405	probable beta-D-xylosidase 7
sot-r.1	102604870	probable beta-D-xylosidase 7
nta-r.1	107791565	putative beta-D-xylosidase 7
nta-r.1	107770068	putative beta-D-xylosidase 7
ath-u.5	AT1G78060	Glycosyl hydrolase family protein
gma-u.5	100801565	probable beta-D-xylosidase 7
gma-u.5	100812757	probable beta-D-xylosidase 7
gma-u.5	100780688	probable beta-D-xylosidase 7
bra-r.6	103832229	probable beta-D-xylosidase 7
vvi-u.5	100262668	probable beta-D-xylosidase 7
vvi-u.5	100265962	probable beta-D-xylosidase 7
ppo-u.5	7463208	probable beta-D-xylosidase 7
mtr-u.5	11427355	probable beta-D-xylosidase 7
mtr-u.5	11436086	probable beta-D-xylosidase 7
mtr-u.5	11432485	probable beta-D-xylosidase 7
ghi-r.1	107937548	probable beta-D-xylosidase 7
ghi-r.1	121229041	probable beta-D-xylosidase 7
ghi-r.1	107922477	probable beta-D-xylosidase 7
bna-r.1	106400096	probable beta-D-xylosidase 7
bna-r.1	106354576	probable beta-D-xylosidase 7
cit-r.1	102614614	probable beta-D-xylosidase 7
osa-u.5	4350320	probable beta-D-xylosidase 7
osa-u.5	4350302	probable beta-D-xylosidase 7
zma-u.5	100191418	putative O-Glycosyl hydrolase superfamily protein
zma-u.5	103646920	probable beta-D-xylosidase 7
zma-u.5	100502339	putative O-Glycosyl hydrolase superfamily protein
tae-r.2	123066580	probable beta-D-xylosidase 7
tae-r.2	123075607	probable beta-D-xylosidase 7
tae-r.2	123086884	probable beta-D-xylosidase 7
hvu-r.1	123449358	probable beta-D-xylosidase 7
hvu-r.1	123447748	probable beta-D-xylosidase 7
hvu-r.1	123402524	probable beta-D-xylosidase 7
sbi-r.1	8155716	probable beta-D-xylosidase 7
sbi-r.1	8075695	probable beta-D-xylosidase 7
sbi-r.1	8155572	probable beta-D-xylosidase 7
bdi-r.1	100839124	probable beta-D-xylosidase 7
bdi-r.1	100834047	probable beta-D-xylosidase 7
bdi-r.1	100826449	probable beta-D-xylosidase 7

Top 50 coexpressed genes to Arf/Xyl4 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to Arf/Xyl4 (sly-u.5 coexpression data)

CoexMap"101055561"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031222 [list] [network] arabinan catabolic process	(8 genes)	IEA
GO:0045493 [list] [network] xylan catabolic process	(8 genes)	IEA

GO CC

GO:0009505 [list] [network] plant-type cell wall

(87 genes)

IEA

GO MF

GO:0009044 [list] [network] xylan 1,4-beta-xylosidase activity	(8 genes)	IEA
GO:0046556 [list] [network] alpha-L-arabinofuranosidase activity	(11 genes)	IEA

Protein

NP_001266114.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 4, chlo 3, golg 1, chlo_mito 1

(predict for NP_001266114.1)

Subcellular
localization
TargetP

scret 6

(predict for NP_001266114.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for Arf/Xyl4	sly-r.6 for Arf/Xyl4	sly-u.5 for Arf/Xyl3	sot-r.1 for 102598405	sot-r.1 for 102604870	nta-r.1 for 107791565	nta-r.1 for 107770068	ath-u.5 for AT1G78060	gma-u.5 for 100801565	gma-u.5 for 100812757	gma-u.5 for 100780688	bra-r.6 for 103832229	vvi-u.5 for 100262668	vvi-u.5 for 100265962	ppo-u.5 for 7463208	mtr-u.5 for 11427355	mtr-u.5 for 11436086	mtr-u.5 for 11432485	ghi-r.1 for 107937548	ghi-r.1 for 121229041	ghi-r.1 for 107922477	bna-r.1 for 106400096	bna-r.1 for 106354576	cit-r.1 for 102614614	osa-u.5 for 4350320	osa-u.5 for 4350302	zma-u.5 for 100191418	zma-u.5 for 103646920	zma-u.5 for 100502339	tae-r.2 for 123066580	tae-r.2 for 123075607	tae-r.2 for 123086884	hvu-r.1 for 123449358	hvu-r.1 for 123447748	hvu-r.1 for 123402524	sbi-r.1 for 8155716	sbi-r.1 for 8075695	sbi-r.1 for 8155572	bdi-r.1 for 100839124	bdi-r.1 for 100834047	bdi-r.1 for 100826449

Ortholog

Ortholog ID: 2186

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

alpha-L-arabinofuranosidase/beta-xylosidase

probable beta-D-xylosidase 7

putative beta-D-xylosidase 7

Glycosyl hydrolase family protein

probable beta-D-xylosidase 7

putative O-Glycosyl hydrolase superfamily protein

probable beta-D-xylosidase 7

putative O-Glycosyl hydrolase superfamily protein

probable beta-D-xylosidase 7

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00430	Taurine and hypotaurine metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00430	Taurine and hypotaurine metabolism	5
sot03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	5
nta00460	Cyanoamino acid metabolism	3
nta00999	Biosynthesis of various plant secondary metabolites	3
nta04145	Phagosome	3
nta04517	IgSF CAM signaling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	3
gma01250	Biosynthesis of nucleotide sugars	3
gma00010	Glycolysis / Gluconeogenesis	2
gma00030	Pentose phosphate pathway	2
gma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	2
gma00030	Pentose phosphate pathway	2
gma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra01200	Carbon metabolism	2
bra00520	Amino sugar and nucleotide sugar metabolism	2
bra01250	Biosynthesis of nucleotide sugars	2
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03030	DNA replication	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00053	Ascorbate and aldarate metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01240	Biosynthesis of cofactors	4
ghi03010	Ribosome	4
ghi00053	Ascorbate and aldarate metabolism	2
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00053	Ascorbate and aldarate metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00860	Porphyrin metabolism	5
bna01240	Biosynthesis of cofactors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00860	Porphyrin metabolism	5
bna01240	Biosynthesis of cofactors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	4
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2
hvu00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3
sbi04626	Plant-pathogen interaction	3
sbi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	2
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

101055561

101055560

102598405

102604870

107776309

107776310

844141

100801565

100812757

100780688

103832229

100262668

100265962

7463208

11427355

11432485

25489424

107937548

107922477

107910582

106400096

106354576

102614614

4350320

4350302

100191418

103646920

100502339

123075607

123093020

123096096

123449358

123402524

8155716

8075695

8155572

100839124

100826449

100835575

The preparation time of this page was 0.1 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	1	3	1	2	1	3	3	2	1	2	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to Arf/Xyl4 (sly-u.5 coexpression data)

Top 50 enrichment test to Arf/Xyl4 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**