Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101243818   protein RETICULATA-RELATED 3, chloroplastic 
 sly-r.6   101243818   protein RETICULATA-RELATED 3, chloroplastic 
 sly-u.5   101260284   protein RETICULATA-RELATED 3, chloroplastic-like 
 sot-r.1   107057868   protein RETICULATA-RELATED 3, chloroplastic-like 
 sot-r.1   102590049   protein RETICULATA-RELATED 3, chloroplastic-like 
 nta-r.1   107766482   protein RETICULATA-RELATED 3, chloroplastic 
 nta-r.1   107779551   protein RETICULATA-RELATED 3, chloroplastic 
 nta-r.1   107804872   protein RETICULATA-RELATED 3, chloroplastic-like 
 ath-u.5   AT3G08630   alphavirus core family protein (DUF3411) 
 ath-u.5   AT3G08640   alphavirus core family protein (DUF3411) 
 gma-u.5   100792419   protein RETICULATA-RELATED 3, chloroplastic 
 gma-u.5   100798978   protein RETICULATA-RELATED 3, chloroplastic 
 gma-u.5   100815884   protein RETICULATA-RELATED 2, chloroplastic 
 bra-r.6   103848830   protein RETICULATA-RELATED 3, chloroplastic 
 bra-r.6   103870607   protein RETICULATA-RELATED 2, chloroplastic 
 vvi-u.5   100258770   protein RETICULATA-RELATED 3, chloroplastic 
 ppo-u.5   18100021   protein RETICULATA-RELATED 3, chloroplastic 
 ppo-u.5   7482617   protein RETICULATA-RELATED 3, chloroplastic 
 mtr-u.5   11435338   protein RETICULATA-RELATED 3, chloroplastic 
 mtr-u.5   11428701   protein RETICULATA-RELATED 3, chloroplastic 
 ghi-r.1   107935983   protein RETICULATA-RELATED 3, chloroplastic 
 ghi-r.1   107935970   protein RETICULATA-RELATED 3, chloroplastic 
 bna-r.1   125588594   protein RETICULATA-RELATED 3, chloroplastic-like 
 bna-r.1   106452847   protein RETICULATA-RELATED 2, chloroplastic-like 
 cit-r.1   102616987   protein RETICULATA-RELATED 3, chloroplastic 
 osa-u.5   4327588   protein RETICULATA-RELATED 3, chloroplastic 
 zma-u.5   100383393   Protein RETICULATA-RELATED 3 chloroplastic 
 zma-u.5   100276764   Protein RETICULATA-RELATED 3 chloroplastic 
 tae-r.2   123062382   protein RETICULATA-RELATED 3, chloroplastic 
 tae-r.2   123067620   protein RETICULATA-RELATED 3, chloroplastic 
 tae-r.2   123079516   protein RETICULATA-RELATED 3, chloroplastic 
 hvu-r.1   123441962   protein RETICULATA-RELATED 3, chloroplastic-like 
 sbi-r.1   8079611   protein RETICULATA-RELATED 3, chloroplastic 
 sbi-r.1   110434210   protein RETICULATA-RELATED 3, chloroplastic-like 
 bdi-r.1   104582646   uncharacterized LOC104582646 
 bdi-r.1   100827140   protein RETICULATA-RELATED 3, chloroplastic 
 cre-r.1   CHLRE_16g678000v5   uncharacterized protein 

close


Top 50 coexpressed genes to 101243818 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 101243818 (sly-u.5 coexpression data)

CoexMap"101243818"


slyLOC101243818 | Entrez gene ID : 101243818      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 3 2 1 2 2 2 2 1 1 2 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_004246971.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  E.R. 1,  E.R._vacu 1  (predict for XP_004246971.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_004246971.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101243818
sly-r.6
for
101243818
sly-u.5
for
101260284
sot-r.1
for
107057868
sot-r.1
for
102590049
nta-r.1
for
107766482
nta-r.1
for
107779551
nta-r.1
for
107804872
ath-u.5
for
AT3G08630
ath-u.5
for
AT3G08640
gma-u.5
for
100792419
gma-u.5
for
100798978
gma-u.5
for
100815884
bra-r.6
for
103848830
bra-r.6
for
103870607
vvi-u.5
for
100258770
ppo-u.5
for
18100021
ppo-u.5
for
7482617
mtr-u.5
for
11435338
mtr-u.5
for
11428701
ghi-r.1
for
107935983
ghi-r.1
for
107935970
bna-r.1
for
125588594
bna-r.1
for
106452847
cit-r.1
for
102616987
osa-u.5
for
4327588
zma-u.5
for
100383393
zma-u.5
for
100276764
tae-r.2
for
123062382
tae-r.2
for
123067620
tae-r.2
for
123079516
hvu-r.1
for
123441962
sbi-r.1
for
8079611
sbi-r.1
for
110434210
bdi-r.1
for
104582646
bdi-r.1
for
100827140
cre-r.1
for
CHLRE_16g678000v5


Ortholog ID: 4898
Species sly sly sot sot nta nta nta ath ath gma gma gma bra bra vvi ppo ppo mtr mtr ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC101243818 LOC101260284 LOC107057868 LOC102590049 LOC107766482 LOC107779551 LOC107804872 AT3G08630 AT3G08640 LOC100792419 LOC100798978 LOC100815884 LOC103848830 LOC103870607 LOC100258770 LOC18100021 LOC7482617 LOC11435338 LOC11428701 LOC107935970 LOC107903898 LOC125588594 LOC106452847 LOC106427966 LOC102616987 LOC4327588 LOC100383393 LOC100276764 LOC123062382 LOC123067620 LOC123079516 LOC123441962 LOC8079611 LOC110434210 LOC104582646 LOC100827140 CHLRE_16g678000v5
Function* protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like alphavirus core family protein (DUF3411) alphavirus core family protein (DUF3411) protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 2, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 2, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 2, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic Protein RETICULATA-RELATED 3 chloroplastic Protein RETICULATA-RELATED 3 chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like uncharacterized LOC104582646 protein RETICULATA-RELATED 3, chloroplastic uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 11
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 5
sly00030 Pentose phosphate pathway 2
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot01230 Biosynthesis of amino acids 4
sot00260 Glycine, serine and threonine metabolism 3
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 7
nta00270 Cysteine and methionine metabolism 5
nta00450 Selenocompound metabolism 3
nta01230 Biosynthesis of amino acids 3
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 8
nta00270 Cysteine and methionine metabolism 6
nta00450 Selenocompound metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00670 One carbon pool by folate 5
ath01230 Biosynthesis of amino acids 5
ath01240 Biosynthesis of cofactors 4
ath00270 Cysteine and methionine metabolism 4
ath00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00920 Sulfur metabolism 4
ath00270 Cysteine and methionine metabolism 3
ath01320 Sulfur cycle 3
ath00966 Glucosinolate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00030 Pentose phosphate pathway 5
gma01200 Carbon metabolism 5
gma00710 Carbon fixation by Calvin cycle 3
gma01230 Biosynthesis of amino acids 3
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 11
gma01230 Biosynthesis of amino acids 8
gma00030 Pentose phosphate pathway 8
gma00010 Glycolysis / Gluconeogenesis 5
gma00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 6
bra01230 Biosynthesis of amino acids 5
bra01320 Sulfur cycle 4
bra00270 Cysteine and methionine metabolism 3
bra00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 4
bra01230 Biosynthesis of amino acids 4
bra00520 Amino sugar and nucleotide sugar metabolism 4
bra01250 Biosynthesis of nucleotide sugars 4
bra00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 9
ppo00270 Cysteine and methionine metabolism 6
ppo01200 Carbon metabolism 6
ppo00450 Selenocompound metabolism 4
ppo00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00260 Glycine, serine and threonine metabolism 2
mtr00270 Cysteine and methionine metabolism 2
mtr01200 Carbon metabolism 2
mtr01230 Biosynthesis of amino acids 2
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00061 Fatty acid biosynthesis 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
ghi01230 Biosynthesis of amino acids 10
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
ghi01230 Biosynthesis of amino acids 10
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit00190 Oxidative phosphorylation 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit01230 Biosynthesis of amino acids 3
cit00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa01200 Carbon metabolism 4
osa01230 Biosynthesis of amino acids 3
osa00190 Oxidative phosphorylation 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma03010 Ribosome 5
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma00650 Butanoate metabolism 3
zma00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00260 Glycine, serine and threonine metabolism 7
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 4
tae00270 Cysteine and methionine metabolism 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae00750 Vitamin B6 metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00260 Glycine, serine and threonine metabolism 7
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 5
hvu01230 Biosynthesis of amino acids 5
hvu00270 Cysteine and methionine metabolism 4
hvu00260 Glycine, serine and threonine metabolism 3
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 5
bdi00270 Cysteine and methionine metabolism 4
bdi01200 Carbon metabolism 4
bdi00260 Glycine, serine and threonine metabolism 3
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 4
cre01240 Biosynthesis of cofactors 2
cre00670 One carbon pool by folate 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101243818 101260284 107057868 102590049 107766482 107779551 107804872 820010 820011 100792419 100798978 100815884 103848830 103870607 100258770 18100021 7482617 11435338 11428701 107935970 107903898 125588594 106452847 106427966 102616987 4327588 100383393 100276764 123062382 123067620 123079516 123441962 8079611 110434210 104582646 100827140 5721512
The preparation time of this page was 1.9 [sec].