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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8079611   protein RETICULATA-RELATED 3, chloroplastic 
 zma-u.5   100276764   Protein RETICULATA-RELATED 3 chloroplastic 
 zma-u.5   100383393   Protein RETICULATA-RELATED 3 chloroplastic 
 osa-u.5   4327588   protein RETICULATA-RELATED 3, chloroplastic 
 ath-u.5   AT3G08630   alphavirus core family protein (DUF3411) 
 ath-u.5   AT3G08640   alphavirus core family protein (DUF3411) 
 gma-u.5   100798978   protein RETICULATA-RELATED 3, chloroplastic 
 gma-u.5   100815884   protein RETICULATA-RELATED 2, chloroplastic 
 gma-u.5   100792419   protein RETICULATA-RELATED 3, chloroplastic 
 sly-u.5   101260284   protein RETICULATA-RELATED 3, chloroplastic-like 
 sly-u.5   101243818   protein RETICULATA-RELATED 3, chloroplastic 
 vvi-u.5   100258770   protein RETICULATA-RELATED 3, chloroplastic 
 ppo-u.5   18100021   protein RETICULATA-RELATED 3, chloroplastic 
 ppo-u.5   7482617   protein RETICULATA-RELATED 3, chloroplastic 
 mtr-u.5   11435338   protein RETICULATA-RELATED 3, chloroplastic 
 mtr-u.5   11428701   protein RETICULATA-RELATED 3, chloroplastic 

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Top 50 coexpressed genes to 8079611 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8079611 (sbi-r.1 coexpression data)

CoexMap"8079611"


sbiLOC8079611 | Entrez gene ID : 8079611    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 2 3 2 1 2 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_021319340.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_021319340.1)
Subcellular
localization
TargetP
mito 8,  other 4  (predict for XP_021319340.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8079611

.
zma-u.5
for
100276764

.
zma-u.5
for
100383393

.
osa-u.5
for
4327588

.
ath-u.5
for
AT3G08630

.
ath-u.5
for
AT3G08640

.
gma-u.5
for
100798978

.
gma-u.5
for
100815884

.
gma-u.5
for
100792419

.
sly-u.5
for
101260284

.
sly-u.5
for
101243818

.
vvi-u.5
for
100258770

.
ppo-u.5
for
18100021

.
ppo-u.5
for
7482617

.
mtr-u.5
for
11435338

.
mtr-u.5
for
11428701

.


Ortholog ID: 4898
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT3G08630 AT3G08640 LOC100798978 LOC100815884 LOC101243818 LOC101260284 LOC4327588 LOC100276764 LOC100383393 LOC103848830 LOC103870607 LOC100258770 LOC18100021 LOC7482617 LOC11435338 LOC11428701 LOC123079516 LOC123062382 LOC123441962 LOC107903898 LOC106427966 LOC106452847 CHLRE_16g678000v5 LOC110434210 LOC8079611 LOC102590049 LOC107057868 LOC102616987 LOC100827140 LOC104582646 LOC107804872 LOC107766482
Function* alphavirus core family protein (DUF3411) alphavirus core family protein (DUF3411) protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 2, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic Protein RETICULATA-RELATED 3 chloroplastic Protein RETICULATA-RELATED 3 chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 2, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 2, chloroplastic-like uncharacterized protein protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic protein RETICULATA-RELATED 3, chloroplastic uncharacterized LOC104582646 protein RETICULATA-RELATED 3, chloroplastic-like protein RETICULATA-RELATED 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00670 One carbon pool by folate 5
ath01230 Biosynthesis of amino acids 5
ath01240 Biosynthesis of cofactors 4
ath00270 Cysteine and methionine metabolism 4
ath00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00920 Sulfur metabolism 4
ath00270 Cysteine and methionine metabolism 3
ath01320 Sulfur cycle 3
ath00966 Glucosinolate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00030 Pentose phosphate pathway 5
gma01200 Carbon metabolism 5
gma00710 Carbon fixation by Calvin cycle 3
gma01230 Biosynthesis of amino acids 3
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 11
gma01230 Biosynthesis of amino acids 8
gma00030 Pentose phosphate pathway 8
gma00010 Glycolysis / Gluconeogenesis 5
gma00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 11
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 5
sly00030 Pentose phosphate pathway 2
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa01200 Carbon metabolism 4
osa01230 Biosynthesis of amino acids 3
osa00190 Oxidative phosphorylation 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma03010 Ribosome 5
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma00650 Butanoate metabolism 3
zma00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 6
bra01230 Biosynthesis of amino acids 5
bra01320 Sulfur cycle 4
bra00270 Cysteine and methionine metabolism 3
bra00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 4
bra01230 Biosynthesis of amino acids 4
bra00520 Amino sugar and nucleotide sugar metabolism 4
bra01250 Biosynthesis of nucleotide sugars 4
bra00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 9
ppo00270 Cysteine and methionine metabolism 6
ppo01200 Carbon metabolism 6
ppo00450 Selenocompound metabolism 4
ppo00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00260 Glycine, serine and threonine metabolism 2
mtr00270 Cysteine and methionine metabolism 2
mtr01200 Carbon metabolism 2
mtr01230 Biosynthesis of amino acids 2
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00061 Fatty acid biosynthesis 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00260 Glycine, serine and threonine metabolism 7
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00260 Glycine, serine and threonine metabolism 7
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 5
hvu01230 Biosynthesis of amino acids 5
hvu00270 Cysteine and methionine metabolism 4
hvu00260 Glycine, serine and threonine metabolism 3
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
ghi01230 Biosynthesis of amino acids 10
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 4
cre01240 Biosynthesis of cofactors 2
cre00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot01230 Biosynthesis of amino acids 4
sot00260 Glycine, serine and threonine metabolism 3
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit00190 Oxidative phosphorylation 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit01230 Biosynthesis of amino acids 3
cit00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 5
bdi00270 Cysteine and methionine metabolism 4
bdi01200 Carbon metabolism 4
bdi00260 Glycine, serine and threonine metabolism 3
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 8
nta00270 Cysteine and methionine metabolism 6
nta00450 Selenocompound metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820010 820011 100798978 100815884 101243818 101260284 4327588 100276764 100383393 103848830 103870607 100258770 18100021 7482617 11435338 11428701 123079516 123062382 123441962 107903898 106427966 106452847 5721512 110434210 8079611 102590049 107057868 102616987 100827140 104582646 107804872 107766482
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