ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101243936	protein RRP6-like 2
sly-r.6	101243936	protein RRP6-like 2
sot-r.1	102603216	protein RRP6-like 2
nta-r.1	107819072	protein RRP6-like 2
nta-r.1	107823544	protein RRP6-like 2
ath-u.5	AT5G35910	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
ath-u.5	AT1G54440	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
gma-u.5	100804872	protein RRP6-like 2
gma-u.5	100815329	protein RRP6-like 2
bra-r.6	103844335	protein RRP6-like 1
bra-r.6	103868297	protein RRP6-like 2
vvi-u.5	100265580	protein RRP6-like 2
ppo-u.5	7482373	protein RRP6-like 2
ppo-u.5	7491060	protein RRP6-like 2
mtr-u.5	25495837	protein RRP6-like 2
mtr-u.5	11432643	protein RRP6-like 2
ghi-r.1	107893774	protein RRP6-like 2
ghi-r.1	121223096	protein RRP6-like 2
ghi-r.1	107913697	protein RRP6-like 2
bna-r.1	106436830	protein RRP6-like 1
bna-r.1	106415808	protein RRP6-like 2
bna-r.1	106411655	protein RRP6-like 1
cit-r.1	102609201	protein RRP6-like 2
osa-u.5	9270208	protein RRP6-like 2
osa-u.5	4331677	protein RRP6-like 2
zma-u.5	100384536	Protein RRP6-like 2
zma-u.5	100383056	uncharacterized LOC100383056
tae-r.2	123093204	protein RRP6-like 1
tae-r.2	123084885	protein RRP6-like 2
tae-r.2	123098466	protein RRP6-like 1
hvu-r.1	123429464	protein RRP6-like 2
hvu-r.1	123449486	protein RRP6-like 1
sbi-r.1	8067368	protein RRP6-like 1
sbi-r.1	8057787	protein RRP6-like 2
sbi-r.1	8080529	protein RRP6-like 1
bdi-r.1	100833602	protein RRP6-like 1
bdi-r.1	100829771	protein RRP6-like 2
cre-r.1	CHLRE_12g512250v5	uncharacterized protein

Top 50 coexpressed genes to 101243936 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101243936 (sly-u.5 coexpression data)

CoexMap"101243936"

[Cytoscape]

Annotation

functional annotation

KEGG

sly03018 [list] [network] RNA degradation (116 genes)

GO BP

GO:0071036 [list] [network] nuclear polyadenylation-dependent snoRNA catabolic process	(2 genes)	IEA
GO:0071037 [list] [network] nuclear polyadenylation-dependent snRNA catabolic process	(2 genes)	IEA
GO:0071039 [list] [network] nuclear polyadenylation-dependent CUT catabolic process	(2 genes)	IEA
GO:0071040 [list] [network] nuclear polyadenylation-dependent antisense transcript catabolic process	(2 genes)	IEA
GO:0071044 [list] [network] histone mRNA catabolic process	(2 genes)	IEA
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing	(7 genes)	IEA
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process	(8 genes)	IEA
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway	(8 genes)	IEA
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(9 genes)	IEA

GO CC

GO:0000176 [list] [network] nuclear exosome (RNase complex)	(13 genes)	IEA
GO:0005730 [list] [network] nucleolus	(194 genes)	IEA

GO MF

GO:0003727 [list] [network] single-stranded RNA binding	(24 genes)	IEA
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity	(30 genes)	IEA
GO:0000166 [list] [network] nucleotide binding	(2632 genes)	IEA

Protein

XP_004248555.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 4

(predict for XP_004248555.1)

Subcellular
localization
TargetP

other 8

(predict for XP_004248555.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101243936	sly-r.6 for 101243936	sot-r.1 for 102603216	nta-r.1 for 107819072	nta-r.1 for 107823544	ath-u.5 for AT5G35910	ath-u.5 for AT1G54440	gma-u.5 for 100804872	gma-u.5 for 100815329	bra-r.6 for 103844335	bra-r.6 for 103868297	vvi-u.5 for 100265580	ppo-u.5 for 7482373	ppo-u.5 for 7491060	mtr-u.5 for 25495837	mtr-u.5 for 11432643	ghi-r.1 for 107893774	ghi-r.1 for 121223096	ghi-r.1 for 107913697	bna-r.1 for 106436830	bna-r.1 for 106415808	bna-r.1 for 106411655	cit-r.1 for 102609201	osa-u.5 for 9270208	osa-u.5 for 4331677	zma-u.5 for 100384536	zma-u.5 for 100383056	tae-r.2 for 123093204	tae-r.2 for 123084885	tae-r.2 for 123098466	hvu-r.1 for 123429464	hvu-r.1 for 123449486	sbi-r.1 for 8067368	sbi-r.1 for 8057787	sbi-r.1 for 8080529	bdi-r.1 for 100833602	bdi-r.1 for 100829771	cre-r.1 for CHLRE_12g512250v5

Ortholog

Ortholog ID: 3626

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein RRP6-like 2

Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein

protein RRP6-like 2

protein RRP6-like 1

protein RRP6-like 2

protein RRP6-like 1

protein RRP6-like 2

Protein RRP6-like 2

uncharacterized LOC100383056

protein RRP6-like 2

protein RRP6-like 1

protein RRP6-like 2

protein RRP6-like 1

protein RRP6-like 2

protein RRP6-like 1

protein RRP6-like 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03018	RNA degradation	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6
bra03020	RNA polymerase	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	7
cit03018	RNA degradation	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04145	Phagosome	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	7
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

101243936

102603216

107819072

107823544

833577

841886

100804872

100819332

103844335

103868297

100265580

7482373

7491060

25495837

11432643

107893774

107937362

107920252

106415808

106411655

125605519

102609201

9270208

4331677

100384536

100383056

123084885

123098466

123043600

123429464

123449486

8067368

8057787

8080529

100833602

100829771

66055549

The preparation time of this page was 0.1 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	2	2	2	2	1	2	2	3	3	1	2	2	3	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101243936 (sly-u.5 coexpression data)

Top 50 enrichment test to 101243936 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**