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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-r.7   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-m.9   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-e.2   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-m.4.bio   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-m.4.hor   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-m.4.lig   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-m.4.str   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-m.4.tis   AT1G54440   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ath-u.5   AT5G35910   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 bra-r.6   103868297   protein RRP6-like 2 
 bra-r.6   103844335   protein RRP6-like 1 
 bna-r.1   125605519   protein RRP6-like 2 
 bna-r.1   106384870   protein RRP6-like 2 
 bna-r.1   106411655   protein RRP6-like 1 
 ghi-r.1   121223096   protein RRP6-like 2 
 ghi-r.1   121203609   protein RRP6-like 2 
 ghi-r.1   107937362   protein RRP6-like 2 
 cit-r.1   102609201   protein RRP6-like 2 
 gma-u.5   100819332   protein RRP6-like 2 
 gma-u.5   100815329   protein RRP6-like 2 
 gma-u.5   100804872   protein RRP6-like 2 
 vvi-u.5   100265580   protein RRP6-like 2 
 ppo-u.5   7491060   protein RRP6-like 2 
 ppo-u.5   7482373   protein RRP6-like 2 
 mtr-u.5   25495837   protein RRP6-like 2 
 mtr-u.5   11432643   protein RRP6-like 2 
 sly-u.5   101243936   protein RRP6-like 2 
 sot-r.1   102603216   protein RRP6-like 2 
 nta-r.1   107819072   protein RRP6-like 2 
 nta-r.1   107823544   protein RRP6-like 2 
 osa-u.5   9270208   protein RRP6-like 2 
 osa-u.5   4331677   protein RRP6-like 2 
 zma-u.5   100383056   uncharacterized LOC100383056 
 zma-u.5   100384536   Protein RRP6-like 2 
 tae-r.2   123043600   protein RRP6-like 2 
 tae-r.2   123084885   protein RRP6-like 2 
 tae-r.2   123098466   protein RRP6-like 1 
 hvu-r.1   123429464   protein RRP6-like 2 
 hvu-r.1   123449486   protein RRP6-like 1 
 sbi-r.1   8057787   protein RRP6-like 2 
 sbi-r.1   8067368   protein RRP6-like 1 
 sbi-r.1   8080529   protein RRP6-like 1 
 bdi-r.1   100833602   protein RRP6-like 1 
 bdi-r.1   100829771   protein RRP6-like 2 
 cre-r.1   CHLRE_12g512250v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G54440 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G54440 (ath-u.5 coexpression data)

CoexMap""


athAT1G54440 | Entrez gene ID : 841886      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 1 3 1 2 2 1 1 2 2 2 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
KEGG ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:1903705 [list] [network] positive regulation of siRNA processing  (1 genes)  IMP  
GO:1904281 [list] [network] positive regulation of transcription by RNA polymerase V  (1 genes)  IMP  
GO:1990280 [list] [network] RNA localization to chromatin  (1 genes)  IMP  
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (44 genes)  IMP  
GO:0006346 [list] [network] DNA methylation-dependent constitutive heterochromatin formation  (53 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (13 genes)  IMP  
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
Protein NP_001185222.1 [sequence] [blastp]
NP_001323051.1 [sequence] [blastp]
NP_001323052.1 [sequence] [blastp]
NP_001323053.1 [sequence] [blastp]
NP_175846.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001185222.1)
nucl 6,  chlo 1,  cyto 1  (predict for NP_001323051.1)
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001323052.1)
cyto 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001323053.1)
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_175846.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001185222.1)
other 9  (predict for NP_001323051.1)
other 9  (predict for NP_001323052.1)
other 9  (predict for NP_001323053.1)
other 9  (predict for NP_175846.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G54440
ath-r.7
for
AT1G54440
ath-m.9
for
AT1G54440
ath-e.2
for
AT1G54440
ath-m.4.bio
for
AT1G54440
ath-m.4.hor
for
AT1G54440
ath-m.4.lig
for
AT1G54440
ath-m.4.str
for
AT1G54440
ath-m.4.tis
for
AT1G54440
ath-u.5
for
AT5G35910
bra-r.6
for
103868297
bra-r.6
for
103844335
bna-r.1
for
125605519
bna-r.1
for
106384870
bna-r.1
for
106411655
ghi-r.1
for
121223096
ghi-r.1
for
121203609
ghi-r.1
for
107937362
cit-r.1
for
102609201
gma-u.5
for
100819332
gma-u.5
for
100815329
gma-u.5
for
100804872
vvi-u.5
for
100265580
ppo-u.5
for
7491060
ppo-u.5
for
7482373
mtr-u.5
for
25495837
mtr-u.5
for
11432643
sly-u.5
for
101243936
sot-r.1
for
102603216
nta-r.1
for
107819072
nta-r.1
for
107823544
osa-u.5
for
9270208
osa-u.5
for
4331677
zma-u.5
for
100383056
zma-u.5
for
100384536
tae-r.2
for
123043600
tae-r.2
for
123084885
tae-r.2
for
123098466
hvu-r.1
for
123429464
hvu-r.1
for
123449486
sbi-r.1
for
8057787
sbi-r.1
for
8067368
sbi-r.1
for
8080529
bdi-r.1
for
100833602
bdi-r.1
for
100829771
cre-r.1
for
CHLRE_12g512250v5

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Ortholog ID: 3626
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol AT1G54440 AT5G35910 LOC103868297 LOC103844335 LOC125605519 LOC106411655 LOC106415808 LOC107937362 LOC107893774 LOC107920252 LOC102609201 LOC100819332 LOC100804872 LOC100265580 LOC7491060 LOC7482373 LOC25495837 LOC11432643 LOC101243936 LOC102603216 LOC107819072 LOC107823544 LOC9270208 LOC4331677 LOC100383056 LOC100384536 LOC123043600 LOC123084885 LOC123098466 LOC123429464 LOC123449486 LOC8057787 LOC8067368 LOC8080529 LOC100833602 LOC100829771 CHLRE_12g512250v5
Function* Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein protein RRP6-like 2 protein RRP6-like 1 protein RRP6-like 2 protein RRP6-like 1 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 uncharacterized LOC100383056 Protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 2 protein RRP6-like 1 protein RRP6-like 2 protein RRP6-like 1 protein RRP6-like 2 protein RRP6-like 1 protein RRP6-like 1 protein RRP6-like 1 protein RRP6-like 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
bra03020 RNA polymerase 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 7
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841886 833577 103868297 103844335 125605519 106411655 106415808 107937362 107893774 107920252 102609201 100819332 100804872 100265580 7491060 7482373 25495837 11432643 101243936 102603216 107819072 107823544 9270208 4331677 100383056 100384536 123043600 123084885 123098466 123429464 123449486 8057787 8067368 8080529 100833602 100829771 66055549
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