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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101246618   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 sly-r.6   101246618   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 sly-u.5   101265045   pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like 
 sot-r.1   102597773   pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like 
 sot-r.1   102582022   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 nta-r.1   107787737   uncharacterized LOC107787737 
 nta-r.1   107831019   uncharacterized LOC107831019 
 nta-r.1   107765594   uncharacterized LOC107765594 
 ath-u.5   AT5G61990   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103874637   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 vvi-u.5   100245882   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 vvi-u.5   100251738   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 ppo-u.5   7457577   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 ghi-r.1   107949633   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 ghi-r.1   107887593   pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like 
 bna-r.1   125583975   pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like 
 bna-r.1   106421952   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 bna-r.1   106347751   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 cit-r.1   102623075   pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like 
 cit-r.1   102629776   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 cit-r.1   102613026   pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like 
 sbi-r.1   8063807   pentatricopeptide repeat-containing protein At1g62910 
 bdi-r.1   100831881   pentatricopeptide repeat-containing protein At1g63330 

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Top 50 coexpressed genes to 101246618 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101246618 (sly-u.5 coexpression data)

CoexMap"101246618"


slyLOC101246618 | Entrez gene ID : 101246618      
Species sly sot nta ath bra vvi ppo ghi bna cit sbi bdi osa tae zma cre mtr hvu gma
Paralog 3 2 3 1 1 2 1 2 3 3 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_025885961.2 [sequence] [blastp]
XP_069151471.1 [sequence] [blastp]
XP_069151472.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 4,  mito 3,  cyto_mito 1  (predict for XP_025885961.2)
chlo 5,  chlo_mito 4,  mito 3,  cyto_mito 1  (predict for XP_069151471.1)
chlo 5,  chlo_mito 4,  mito 3,  cyto_mito 1  (predict for XP_069151472.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_025885961.2)
mito 8  (predict for XP_069151471.1)
mito 8  (predict for XP_069151472.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101246618
sly-r.6
for
101246618
sly-u.5
for
101265045
sot-r.1
for
102597773
sot-r.1
for
102582022
nta-r.1
for
107787737
nta-r.1
for
107831019
nta-r.1
for
107765594
ath-u.5
for
AT5G61990
bra-r.6
for
103874637
vvi-u.5
for
100245882
vvi-u.5
for
100251738
ppo-u.5
for
7457577
ghi-r.1
for
107949633
ghi-r.1
for
107887593
bna-r.1
for
125583975
bna-r.1
for
106421952
bna-r.1
for
106347751
cit-r.1
for
102623075
cit-r.1
for
102629776
cit-r.1
for
102613026
sbi-r.1
for
8063807
bdi-r.1
for
100831881


Ortholog ID: 11010
Species sly sly sot sot nta nta nta ath bra vvi vvi ppo ghi ghi bna bna bna cit cit cit sbi bdi
Symbol LOC101246618 LOC101265045 LOC102597773 LOC102582022 LOC107787737 LOC107765594 LOC107800519 AT5G61990 LOC103874637 LOC100245882 LOC100251738 LOC7457577 LOC107949633 LOC107887593 LOC125583975 LOC106421952 LOC106347751 LOC102623075 LOC102629776 LOC102613026 LOC8063807 LOC100831881
Function* pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like pentatricopeptide repeat-containing protein At5g61990, mitochondrial uncharacterized LOC107787737 uncharacterized LOC107765594 uncharacterized LOC107800519 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like pentatricopeptide repeat-containing protein At5g61990, mitochondrial pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like pentatricopeptide repeat-containing protein At1g62910 pentatricopeptide repeat-containing protein At1g63330
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00620 Pyruvate metabolism 2
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101246618 101265045 102597773 102582022 107787737 107765594 107800519 836320 103874637 100245882 100251738 7457577 107949633 107887593 125583975 106421952 106347751 102623075 102629776 102613026 8063807 100831881
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