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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101246693   WD repeat-containing protein 
 sly-r.6   101246693   WD repeat-containing protein 
 sly-m.5   101246693   WD repeat-containing protein 
 sly-u.5   101260155   WD repeat-containing protein VIP3 
 sot-r.1   102577595   vernalization independence 3-like protein 
 sot-r.1   102594133   WD repeat-containing protein VIP3-like 
 nta-r.1   107793953   WD repeat-containing protein VIP3-like 
 nta-r.1   107785395   WD repeat-containing protein VIP3-like 
 nta-r.1   107771470   WD repeat-containing protein VIP3 
 ath-u.5   VIP3   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100791764   WD repeat-containing protein VIP3 
 gma-u.5   100790793   WD repeat-containing protein VIP3 
 bra-r.6   103853257   WD repeat-containing protein VIP3 
 bra-r.6   103834702   WD repeat-containing protein VIP3-like 
 vvi-u.5   100257752   WD repeat-containing protein VIP3 
 ppo-u.5   7484647   WD repeat-containing protein VIP3 
 mtr-u.5   25494198   WD repeat-containing protein VIP3 
 ghi-r.1   107929849   WD repeat-containing protein VIP3 
 ghi-r.1   107901093   WD repeat-containing protein VIP3 
 ghi-r.1   107897717   WD repeat-containing protein VIP3 
 bna-r.1   106361162   WD repeat-containing protein VIP3 
 bna-r.1   106418160   WD repeat-containing protein VIP3 
 bna-r.1   106390074   WD repeat-containing protein VIP3-like 
 cit-r.1   102628906   WD repeat-containing protein VIP3 
 osa-u.5   4351059   WD repeat-containing protein VIP3 
 zma-u.5   100192788   uncharacterized LOC100192788 
 tae-r.2   123091792   WD repeat-containing protein VIP3 
 tae-r.2   123086161   WD repeat-containing protein VIP3 
 tae-r.2   123096857   WD repeat-containing protein VIP3 
 hvu-r.1   123448407   WD repeat-containing protein VIP3 
 sbi-r.1   8070186   WD repeat-containing protein VIP3 
 sbi-r.1   110429556   uncharacterized LOC110429556 
 bdi-r.1   100833314   WD repeat-containing protein VIP3 
 cre-r.1   CHLRE_11g468377v5   uncharacterized protein 

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Top 50 coexpressed genes to 101246693 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101246693 (sly-u.5 coexpression data)

CoexMap"101246693"


slyLOC101246693 | Entrez gene ID : 101246693      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 2 3 1 2 2 1 1 1 3 3 1 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (7 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001334251.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3  (predict for NP_001334251.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001334251.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101246693
sly-r.6
for
101246693
sly-m.5
for
101246693
sly-u.5
for
101260155
sot-r.1
for
102577595
sot-r.1
for
102594133
nta-r.1
for
107793953
nta-r.1
for
107785395
nta-r.1
for
107771470
ath-u.5
for
VIP3
gma-u.5
for
100791764
gma-u.5
for
100790793
bra-r.6
for
103853257
bra-r.6
for
103834702
vvi-u.5
for
100257752
ppo-u.5
for
7484647
mtr-u.5
for
25494198
ghi-r.1
for
107929849
ghi-r.1
for
107901093
ghi-r.1
for
107897717
bna-r.1
for
106361162
bna-r.1
for
106418160
bna-r.1
for
106390074
cit-r.1
for
102628906
osa-u.5
for
4351059
zma-u.5
for
100192788
tae-r.2
for
123091792
tae-r.2
for
123086161
tae-r.2
for
123096857
hvu-r.1
for
123448407
sbi-r.1
for
8070186
sbi-r.1
for
110429556
bdi-r.1
for
100833314
cre-r.1
for
CHLRE_11g468377v5


Ortholog ID: 6058
Species sly sly sot sot nta nta nta ath gma gma bra bra vvi ppo mtr ghi ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC101246693 LOC101260155 LOC102577595 LOC102594133 LOC107793953 LOC107771470 LOC107818848 VIP3 LOC100791764 LOC100790793 LOC103853257 LOC103834702 LOC100257752 LOC7484647 LOC25494198 LOC107901093 LOC107897717 LOC107932285 LOC106361162 LOC106390074 LOC106388756 LOC102628906 LOC4351059 LOC100192788 LOC123091792 LOC123086161 LOC123096857 LOC123448407 LOC8070186 LOC110429556 LOC100833314 CHLRE_11g468377v5
Function* WD repeat-containing protein WD repeat-containing protein VIP3 vernalization independence 3-like protein WD repeat-containing protein VIP3-like WD repeat-containing protein VIP3-like WD repeat-containing protein VIP3 WD repeat-containing protein VIP3-like Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3-like WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3-like WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 uncharacterized LOC100192788 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 uncharacterized LOC110429556 WD repeat-containing protein VIP3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly00270 Cysteine and methionine metabolism 2
sly00620 Pyruvate metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 11
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot03010 Ribosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03050 Proteasome 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 4
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 9
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03050 Proteasome 4
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03018 RNA degradation 4
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit00190 Oxidative phosphorylation 3
cit00290 Valine, leucine and isoleucine biosynthesis 2
cit00770 Pantothenate and CoA biosynthesis 2
cit01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03018 RNA degradation 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi03040 Spliceosome 4
bdi04142 Lysosome 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101246693 101260155 102577595 102594133 107793953 107771470 107818848 829105 100791764 100790793 103853257 103834702 100257752 7484647 25494198 107901093 107897717 107932285 106361162 106390074 106388756 102628906 4351059 100192788 123091792 123086161 123096857 123448407 8070186 110429556 100833314 5725092
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