ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101246998	F-box protein SKIP2-like
sly-r.6	101246998	F-box protein SKIP2-like
sly-u.5	101245757	F-box protein At1g47056
sly-u.5	101247773	F-box protein SKIP2
ath-u.5	VFB2	VIER F-box protein 2
ath-u.5	VFB3	VIER F-box protein 3
ath-u.5	SKIP2	SKP1/ASK1-interacting protein 2
gma-u.5	100779319	F-box protein SKIP2
gma-u.5	100807711	F-box protein SKIP2
gma-u.5	100806231	F-box protein At1g47056
vvi-u.5	100259063	F-box protein At1g47056
vvi-u.5	100250708	F-box protein At1g47056
vvi-u.5	100852716	F-box protein SKIP2
ppo-u.5	18104843	F-box protein At1g47056
ppo-u.5	7454906	F-box protein SKIP2
ppo-u.5	7462590	F-box protein SKIP2
mtr-u.5	112421285	F-box protein SKIP2
mtr-u.5	11420387	F-box protein At1g47056
osa-u.5	4346401	F-box protein At1g47056
osa-u.5	4336338	F-box protein At1g47056
zma-u.5	103641829	F-box protein At1g47056-like
zma-u.5	100284044	uncharacterized LOC100284044
zma-u.5	100279556	uncharacterized LOC100279556

Annotation

functional annotation

KEGG

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(51 genes)

IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex

(43 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(3982 genes)

IEA

Protein

XP_004234661.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 3, cyto 1, cyto_mito 1, mito_plas 1

(predict for XP_004234661.2)

Subcellular
localization
TargetP

other 5, mito 3

(predict for XP_004234661.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101246998	sly-r.6 for 101246998	sly-u.5 for 101245757	sly-u.5 for 101247773	ath-u.5 for VFB2	ath-u.5 for VFB3	ath-u.5 for SKIP2	gma-u.5 for 100779319	gma-u.5 for 100807711	gma-u.5 for 100806231	vvi-u.5 for 100259063	vvi-u.5 for 100250708	vvi-u.5 for 100852716	ppo-u.5 for 18104843	ppo-u.5 for 7454906	ppo-u.5 for 7462590	mtr-u.5 for 112421285	mtr-u.5 for 11420387	osa-u.5 for 4346401	osa-u.5 for 4336338	zma-u.5 for 103641829	zma-u.5 for 100284044	zma-u.5 for 100279556

Ortholog

Ortholog ID: 1465

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

VFB3

VFB2

Function^*

F-box protein SKIP2-like

F-box protein SKIP2

F-box protein At1g47056-like

putative F-box/LRR-repeat protein 8

F-box protein At1g47056

F-box protein At1g47056-like

VIER F-box protein 3

VIER F-box protein 2

F-box protein SKIP2

F-box protein At1g47056

F-box protein SKIP2

F-box protein At1g47056

F-box protein SKIP2

F-box protein At1g47056

F-box protein SKIP2

F-box protein At1g47056

F-box protein At1g47056-like

F-box/LRR-repeat protein 16

F-box protein SKIP2

F-box protein At1g47056

uncharacterized LOC100279556

uncharacterized LOC100284044

F-box protein At1g47056

F-box protein At1g47056-like

F-box protein At1g47056

F-box protein At1g47056-like

F-box protein At1g47056

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	3
ghi04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi04016	MAPK signaling pathway - plant	2
bdi00100	Steroid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

101246998

101247773

102585400

107062868

107782164

142170645

826171

824170

100807711

103829524

103837742

100250708

100852716

18104843

7472683

112421285

11420387

107931670

107922226

125586972

106405922

102629556

102622449

4346401

4336338

100279556

100284044

123053845

123120677

123427190

123452403

8063875

110436572

100833356

100846537

5715688

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101246998 (sly-u.5 coexpression data)

Top 50 enrichment test to 101246998 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	3	3	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101246998 (sly-u.5 coexpression data)

Top 50 enrichment test to 101246998 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**