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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VFB2   VIER F-box protein 2 
 ath-r.7   VFB2   VIER F-box protein 2 
 ath-m.9   VFB2   VIER F-box protein 2 
 ath-e.2   VFB2   VIER F-box protein 2 
 ath-m.4.bio   VFB2   VIER F-box protein 2 
 ath-m.4.hor   VFB2   VIER F-box protein 2 
 ath-m.4.lig   VFB2   VIER F-box protein 2 
 ath-m.4.str   VFB2   VIER F-box protein 2 
 ath-m.4.tis   VFB2   VIER F-box protein 2 
 ath-u.5   VFB3   VIER F-box protein 3 
 ath-u.5   SKIP2   SKP1/ASK1-interacting protein 2 
 ath-u.5   VFB1   VIER F-box protein 1 
 gma-u.5   100817022   F-box protein SKIP2 
 gma-u.5   100807711   F-box protein SKIP2 
 gma-u.5   100806231   F-box protein At1g47056 
 vvi-u.5   100250708   F-box protein At1g47056 
 vvi-u.5   100259063   F-box protein At1g47056 
 vvi-u.5   100852716   F-box protein SKIP2 
 ppo-u.5   18104843   F-box protein At1g47056 
 ppo-u.5   7472683   F-box protein At1g47056 
 ppo-u.5   7454906   F-box protein SKIP2 
 mtr-u.5   11420387   F-box protein At1g47056 
 mtr-u.5   112421285   F-box protein SKIP2 
 sly-u.5   101247773   F-box protein SKIP2 
 sly-u.5   101246998   F-box protein SKIP2-like 
 sly-u.5   101245757   F-box protein At1g47056 
 osa-u.5   4346401   F-box protein At1g47056 
 osa-u.5   4336338   F-box protein At1g47056 
 zma-u.5   103641829   F-box protein At1g47056-like 
 zma-u.5   103632351   F-box protein At1g47056 
 zma-u.5   100284044   uncharacterized LOC100284044 

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Top 50 coexpressed genes to VFB2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VFB2 (ath-u.5 coexpression data)

CoexMap"824170"


athVFB2 | Entrez gene ID : 824170      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 3 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  ISS  
Protein NP_566928.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cyto_nucl 4,  chlo 2,  nucl 1  (predict for NP_566928.1)
Subcellular
localization
TargetP
other 8  (predict for NP_566928.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VFB2
ath-r.7
for
VFB2
ath-m.9
for
VFB2
ath-e.2
for
VFB2
ath-m.4.bio
for
VFB2
ath-m.4.hor
for
VFB2
ath-m.4.lig
for
VFB2
ath-m.4.str
for
VFB2
ath-m.4.tis
for
VFB2
ath-u.5
for
VFB3
ath-u.5
for
SKIP2
ath-u.5
for
VFB1
gma-u.5
for
100817022
gma-u.5
for
100807711
gma-u.5
for
100806231
vvi-u.5
for
100250708
vvi-u.5
for
100259063
vvi-u.5
for
100852716
ppo-u.5
for
18104843
ppo-u.5
for
7472683
ppo-u.5
for
7454906
mtr-u.5
for
11420387
mtr-u.5
for
112421285
sly-u.5
for
101247773
sly-u.5
for
101246998
sly-u.5
for
101245757
osa-u.5
for
4346401
osa-u.5
for
4336338
zma-u.5
for
103641829
zma-u.5
for
103632351
zma-u.5
for
100284044


Ortholog ID: 1465
Species ath ath bra bra bna bna ghi ghi cit cit gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol VFB3 VFB2 LOC103829524 LOC103837742 LOC125586972 LOC106405922 LOC107931670 LOC107922226 LOC102629556 LOC102622449 LOC100807711 LOC100250708 LOC100852716 LOC18104843 LOC7472683 LOC112421285 LOC11420387 LOC101246998 LOC101247773 LOC102585400 LOC107062868 LOC107782164 LOC142170645 LOC4346401 LOC4336338 LOC100279556 LOC100284044 LOC123053845 LOC123120677 LOC123427190 LOC123452403 LOC8063875 LOC110436572 LOC100833356 LOC100846537 CHLRE_01g047650v5
Function* VIER F-box protein 3 VIER F-box protein 2 F-box protein SKIP2 F-box protein SKIP2 F-box protein At1g47056-like F-box/LRR-repeat protein 16 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2-like F-box protein SKIP2 F-box protein At1g47056-like putative F-box/LRR-repeat protein 8 F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056 uncharacterized LOC100279556 uncharacterized LOC100284044 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04016 MAPK signaling pathway - plant 2
bdi00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826171 824170 103829524 103837742 125586972 106405922 107931670 107922226 102629556 102622449 100807711 100250708 100852716 18104843 7472683 112421285 11420387 101246998 101247773 102585400 107062868 107782164 142170645 4346401 4336338 100279556 100284044 123053845 123120677 123427190 123452403 8063875 110436572 100833356 100846537 5715688
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