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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247331   arogenate dehydratase 1 
 sly-r.6   101247331   arogenate dehydratase 1 
 sly-m.5   101247331   arogenate dehydratase 1 
 sly-u.5   101247693   arogenate dehydratase 3 
 ath-u.5   PD1   prephenate dehydratase 1 
 ath-u.5   ADT4   arogenate dehydratase 4 
 ath-u.5   ADT5   arogenate dehydratase 5 
 gma-u.5   100809331   arogenate dehydratase/prephenate dehydratase 6, chloroplastic 
 gma-u.5   100800074   arogenate dehydratase/prephenate dehydratase 6, chloroplastic 
 gma-u.5   100797636   arogenate dehydratase 3 
 vvi-u.5   100267022   arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like 
 ppo-u.5   7478621   arogenate dehydratase 3 
 ppo-u.5   18097987   arogenate dehydratase 3 
 mtr-u.5   11418773   arogenate dehydratase 3, chloroplastic 
 mtr-u.5   25487515   arogenate dehydratase/prephenate dehydratase 6, chloroplastic 
 osa-u.5   4335756   arogenate dehydratase/prephenate dehydratase 6, chloroplastic 
 zma-u.5   103647269   arogenate dehydratase/prephenate dehydratase 6, chloroplastic 
 zma-u.5   100279620   Arogenate dehydratase/prephenate dehydratase 6 chloroplastic 
 zma-u.5   100193934   Arogenate dehydratase/prephenate dehydratase 6 chloroplastic 

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Top 50 coexpressed genes to 101247331 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247331 (sly-u.5 coexpression data)

CoexMap"101247331"


slyLOC101247331 | Entrez gene ID : 101247331    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 3 3 1 2 2 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (49 genes)
sly01230 [list] [network] Biosynthesis of amino acids (226 genes)
GO BP
GO:0009094 [list] [network] L-phenylalanine biosynthetic process  (4 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004664 [list] [network] prephenate dehydratase activity  (4 genes)  IEA  
GO:0047769 [list] [network] arogenate dehydratase activity  (4 genes)  IEA  
Protein XP_004241304.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_004241304.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_004241304.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247331

.
sly-r.6
for
101247331

.
sly-m.5
for
101247331

.
sly-u.5
for
101247693

.
ath-u.5
for
PD1

.
ath-u.5
for
ADT4

.
ath-u.5
for
ADT5

.
gma-u.5
for
100809331

.
gma-u.5
for
100800074

.
gma-u.5
for
100797636

.
vvi-u.5
for
100267022

.
ppo-u.5
for
7478621

.
ppo-u.5
for
18097987

.
mtr-u.5
for
11418773

.
mtr-u.5
for
25487515

.
osa-u.5
for
4335756

.
zma-u.5
for
103647269

.
zma-u.5
for
100279620

.
zma-u.5
for
100193934

.


Ortholog ID: 2317
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit bdi bdi nta nta
Symbol ADT4 ADT5 LOC100800074 LOC100809331 LOC101247331 LOC101247693 LOC4335756 LOC103647269 LOC100279620 LOC103873609 LOC103843406 LOC100267022 LOC18097987 LOC7478621 LOC11418773 LOC25487515 LOC123045378 LOC123041365 LOC123426634 LOC123430245 LOC107931926 LOC107932497 LOC106374925 LOC106371643 LOC8059783 LOC8075256 LOC102579641 LOC102599370 LOC102618210 LOC100842822 LOC100821339 LOC107829564 LOC107817057
Function* arogenate dehydratase 4 arogenate dehydratase 5 arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase 1 arogenate dehydratase 3 arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic Arogenate dehydratase/prephenate dehydratase 6 chloroplastic arogenate dehydratase 4, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like arogenate dehydratase 3 arogenate dehydratase 3 arogenate dehydratase 3, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase 1 arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase 5, chloroplastic-like arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like arogenate dehydratase 3-like arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase/prephenate dehydratase 6, chloroplastic arogenate dehydratase 3 arogenate dehydratase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
ath01230 Biosynthesis of amino acids 3
ath00941 Flavonoid biosynthesis 3
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 7
ath01230 Biosynthesis of amino acids 6
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
ath00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 9
gma01230 Biosynthesis of amino acids 5
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
gma00941 Flavonoid biosynthesis 4
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 11
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
gma00941 Flavonoid biosynthesis 5
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
gma01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 9
sly00941 Flavonoid biosynthesis 5
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 7
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
osa01230 Biosynthesis of amino acids 6
osa00360 Phenylalanine metabolism 5
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 5
zma00360 Phenylalanine metabolism 3
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma00941 Flavonoid biosynthesis 2
zma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00592 alpha-Linolenic acid metabolism 4
zma04075 Plant hormone signal transduction 3
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 7
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
vvi00940 Phenylpropanoid biosynthesis 6
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
vvi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 15
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00270 Cysteine and methionine metabolism 5
ppo00670 One carbon pool by folate 4
ppo01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 10
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ppo00270 Cysteine and methionine metabolism 4
ppo00670 One carbon pool by folate 3
ppo00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 8
mtr00360 Phenylalanine metabolism 5
mtr01230 Biosynthesis of amino acids 5
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 5
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
mtr00030 Pentose phosphate pathway 2
mtr00480 Glutathione metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 7
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
tae01230 Biosynthesis of amino acids 6
tae00941 Flavonoid biosynthesis 6
tae00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
tae01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 8
hvu00360 Phenylalanine metabolism 6
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu01230 Biosynthesis of amino acids 4
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 7
hvu00360 Phenylalanine metabolism 6
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi01230 Biosynthesis of amino acids 7
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00940 Phenylpropanoid biosynthesis 2
ghi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi01230 Biosynthesis of amino acids 7
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00940 Phenylpropanoid biosynthesis 2
ghi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bna01230 Biosynthesis of amino acids 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00360 Phenylalanine metabolism 4
sbi00940 Phenylpropanoid biosynthesis 4
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
sbi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00360 Phenylalanine metabolism 8
sbi00940 Phenylpropanoid biosynthesis 8
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
sbi01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 8
sot01230 Biosynthesis of amino acids 5
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 9
sot00360 Phenylalanine metabolism 6
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sot01230 Biosynthesis of amino acids 2
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00360 Phenylalanine metabolism 3
cit00940 Phenylpropanoid biosynthesis 3
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 8
bdi00360 Phenylalanine metabolism 6
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 5
bdi00360 Phenylalanine metabolism 4
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 4
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 10
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 7
nta00941 Flavonoid biosynthesis 5
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823601 832326 100800074 100809331 101247331 101247693 4335756 103647269 100279620 103873609 103843406 100267022 18097987 7478621 11418773 25487515 123045378 123041365 123426634 123430245 107931926 107932497 106374925 106371643 8059783 8075256 102579641 102599370 102618210 100842822 100821339 107829564 107817057
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