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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247833   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sly-r.6   101247833   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sot-r.1   102605317   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 
 nta-r.1   107780015   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 nta-r.1   107832188   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-u.5   112323234   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ghi-r.1   107912389   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 cit-r.1   102625541   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 

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Top 50 coexpressed genes to 101247833 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247833 (sly-u.5 coexpression data)

CoexMap"101247833"


slyLOC101247833 | Entrez gene ID : 101247833    
Species sly sot nta ppo ghi cit cre vvi bra ath mtr hvu bna tae bdi osa gma zma sbi
Paralog 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (49 genes)
sly00999 [list] [network] Biosynthesis of various plant secondary metabolites (56 genes)
sly01230 [list] [network] Biosynthesis of amino acids (226 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (3 genes)  IEA  
GO:0009423 [list] [network] chorismate biosynthetic process  (7 genes)  IEA  
GO CC
GO MF
GO:0003855 [list] [network] 3-dehydroquinate dehydratase activity  (3 genes)  IEA  
GO:0004764 [list] [network] shikimate 3-dehydrogenase (NADP+) activity  (3 genes)  IEA  
Protein XP_004242317.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  extr 2,  cyto 1,  golg 1,  plas 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_004242317.3)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for XP_004242317.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247833
sly-r.6
for
101247833
sot-r.1
for
102605317
nta-r.1
for
107780015
nta-r.1
for
107832188
ppo-u.5
for
112323234
ghi-r.1
for
107912389
cit-r.1
for
102625541


Ortholog ID: 18728
Species sly sot nta nta ppo ghi cit
Symbol LOC101247833 LOC102605317 LOC107780015 LOC107832188 LOC112323234 LOC107912389 LOC102625541
Function* bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 7
sot00996 Biosynthesis of various alkaloids 3
sot00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta00051 Fructose and mannose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00330 Arginine and proline metabolism 2
cit00360 Phenylalanine metabolism 2
cit00380 Tryptophan metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101247833 102605317 107780015 107832188 112323234 107912389 102625541
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