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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107912389   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-u.5   112323234   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sly-u.5   101247833   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 

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Top 50 coexpressed genes to 107912389 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107912389 (ghi-r.1 coexpression data)

CoexMap"107912389"


ghiLOC107912389 | Entrez gene ID : 107912389    
Species ghi ppo sly nta bna gma tae sot bdi ath hvu cit vvi cre osa bra sbi zma mtr
Paralog 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi00999 [list] [network] Biosynthesis of various plant secondary metabolites (138 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (7 genes)  IEA  
GO:0009423 [list] [network] chorismate biosynthetic process  (16 genes)  IEA  
GO CC
GO MF
GO:0003855 [list] [network] 3-dehydroquinate dehydratase activity  (7 genes)  IEA  
GO:0004764 [list] [network] shikimate 3-dehydrogenase (NADP+) activity  (7 genes)  IEA  
Protein XP_016696029.1 [sequence] [blastp]
XP_016696030.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  pero 1  (predict for XP_016696029.1)
cyto 7,  chlo 1,  pero 1  (predict for XP_016696030.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016696029.1)
other 8  (predict for XP_016696030.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107912389

.
ppo-u.5
for
112323234

.
sly-u.5
for
101247833

.


Ortholog ID: 18728
Species sly ppo ghi sot cit nta nta
Symbol LOC101247833 LOC112323234 LOC107912389 LOC102605317 LOC102625541 LOC107832188 LOC107780015
Function* bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 7
sot00996 Biosynthesis of various alkaloids 3
sot00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00330 Arginine and proline metabolism 2
cit00360 Phenylalanine metabolism 2
cit00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta00051 Fructose and mannose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101247833 112323234 107912389 102605317 102625541 107832188 107780015
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