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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101249125   uncharacterized LOC101249125 
 sly-r.6   101249125   uncharacterized LOC101249125 
 sly-u.5   101253343   uncharacterized LOC101253343 
 sly-u.5   101253649   uncharacterized LOC101253649 
 ath-u.5   AT4G25730   FtsJ-like methyltransferase family protein 
 gma-u.5   100784758   adoMet-dependent rRNA methyltransferase spb1 
 gma-u.5   100790741   adoMet-dependent rRNA methyltransferase spb1 
 vvi-u.5   100255646   adoMet-dependent rRNA methyltransferase spb1 
 ppo-u.5   7456367   adoMet-dependent rRNA methyltransferase spb1 
 mtr-u.5   11439257   pre-rRNA 2'-O-ribose RNA methyltransferase 
 osa-u.5   4339641   uncharacterized LOC4339641 
 zma-u.5   103635342   putative rRNA methyltransferase 
 zma-u.5   100381782   uncharacterized LOC100381782 

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Top 50 coexpressed genes to 101249125 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101249125 (sly-u.5 coexpression data)

CoexMap"101249125"


slyLOC101249125 | Entrez gene ID : 101249125    
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (21 genes)  IEA  
GO:0000466 [list] [network] maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (22 genes)  IEA  
GO:0031167 [list] [network] rRNA methylation  (23 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (24 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (194 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0008650 [list] [network] rRNA (uridine-2'-O-)-methyltransferase activity  (3 genes)  IEA  
GO:0016435 [list] [network] rRNA (guanine) methyltransferase activity  (6 genes)  IEA  
Protein XP_004248814.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_004248814.1)
Subcellular
localization
TargetP
mito 6,  other 6  (predict for XP_004248814.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101249125
sly-r.6
for
101249125
sly-u.5
for
101253343
sly-u.5
for
101253649
ath-u.5
for
AT4G25730
gma-u.5
for
100784758
gma-u.5
for
100790741
vvi-u.5
for
100255646
ppo-u.5
for
7456367
mtr-u.5
for
11439257
osa-u.5
for
4339641
zma-u.5
for
103635342
zma-u.5
for
100381782


Ortholog ID: 5556
Species sly sly sot sot nta nta ath gma gma bra bra vvi ppo mtr ghi ghi bna bna cit osa zma zma tae tae hvu sbi bdi cre
Symbol LOC101253649 LOC101249125 LOC107061167 LOC102589886 LOC107762194 LOC107760171 AT4G25730 LOC100784758 LOC100790741 LOC103861588 LOC103834857 LOC100255646 LOC7456367 LOC11439257 LOC107927920 LOC107908786 LOC106359047 LOC106440860 LOC102627301 LOC4339641 LOC100381782 LOC103635342 LOC123183173 LOC123068768 LOC123450761 LOC8074609 LOC100838173 CHLRE_12g529500v5
Function* uncharacterized LOC101253649 uncharacterized LOC101249125 putative rRNA methyltransferase putative rRNA methyltransferase uncharacterized LOC107762194 uncharacterized LOC107760171 FtsJ-like methyltransferase family protein adoMet-dependent rRNA methyltransferase spb1 adoMet-dependent rRNA methyltransferase spb1 pre-rRNA 2'-O-ribose RNA methyltransferase pre-rRNA 2'-O-ribose RNA methyltransferase adoMet-dependent rRNA methyltransferase spb1 adoMet-dependent rRNA methyltransferase spb1 pre-rRNA 2'-O-ribose RNA methyltransferase adoMet-dependent rRNA methyltransferase spb1 adoMet-dependent rRNA methyltransferase spb1 pre-rRNA 2'-O-ribose RNA methyltransferase pre-rRNA 2'-O-ribose RNA methyltransferase adoMet-dependent rRNA methyltransferase spb1 uncharacterized LOC4339641 uncharacterized LOC100381782 putative rRNA methyltransferase pre-rRNA 2'-O-ribose RNA methyltransferase pre-rRNA 2'-O-ribose RNA methyltransferase pre-rRNA 2'-O-ribose RNA methyltransferase putative rRNA methyltransferase adoMet-dependent rRNA methyltransferase spb1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101253649 101249125 107061167 102589886 107762194 107760171 828678 100784758 100790741 103861588 103834857 100255646 7456367 11439257 107927920 107908786 106359047 106440860 102627301 4339641 100381782 103635342 123183173 123068768 123450761 8074609 100838173 5722423
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