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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101249556   autophagy-related protein 3 
 sly-r.6   101249556   autophagy-related protein 3 
 sly-m.5   101249556   autophagy-related protein 3 
 ath-u.5   ATG3   autophagy 3 (APG3) 
 gma-u.5   100814257   autophagy-related protein 3 
 gma-u.5   ATG3A   autophagy-related protein 3a 
 vvi-u.5   100264989   autophagy-related protein 3 
 ppo-u.5   7465493   autophagy-related protein 3 
 ppo-u.5   112326180   autophagy-related protein 3 
 mtr-u.5   25491869   autophagy-related protein 3 
 osa-u.5   4327346   autophagy-related protein 3 
 osa-u.5   9270245   autophagy-related protein 3 
 zma-u.5   100240689   uncharacterized LOC100240689 

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Top 50 coexpressed genes to 101249556 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101249556 (sly-u.5 coexpression data)

CoexMap"101249556"


slyLOC101249556 | Entrez gene ID : 101249556    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 2 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04136 [list] [network] Autophagy - other (35 genes)
GO BP
GO:0044804 [list] [network] nucleophagy  (14 genes)  IEA  
GO:0000422 [list] [network] autophagy of mitochondrion  (17 genes)  IEA  
GO:0000045 [list] [network] autophagosome assembly  (27 genes)  IEA  
GO CC
GO:0000407 [list] [network] phagophore assembly site  (21 genes)  IEA  
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO MF
GO:0019776 [list] [network] Atg8-family ligase activity  (2 genes)  IEA  
Protein XP_004240761.1 [sequence] [blastp]
XP_069155230.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  cyto_plas 3  (predict for XP_004240761.1)
cyto 4,  chlo 3,  cyto_plas 3  (predict for XP_069155230.1)
Subcellular
localization
TargetP
other 3  (predict for XP_004240761.1)
other 3  (predict for XP_069155230.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101249556

.
sly-r.6
for
101249556

.
sly-m.5
for
101249556

.
ath-u.5
for
ATG3

.
gma-u.5
for
100814257

.
gma-u.5
for
ATG3A

.
vvi-u.5
for
100264989

.
ppo-u.5
for
7465493

.
ppo-u.5
for
112326180

.
mtr-u.5
for
25491869

.
osa-u.5
for
4327346

.
osa-u.5
for
9270245

.
zma-u.5
for
100240689

.


Ortholog ID: 6109
Species ath gma gma sly osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol ATG3 LOC100814257 ATG3A LOC101249556 LOC4327346 LOC9270245 LOC100240689 LOC103860600 LOC103850662 LOC100264989 LOC7465493 LOC112326180 LOC25491869 LOC100415831 LOC123181691 LOC123439560 LOC121204493 LOC107900819 LOC106401795 LOC106422788 CHLRE_02g102350v5 LOC110431628 LOC8081835 LOC102587849 LOC102615659 LOC100820929 LOC107772206 LOC107794515
Function* autophagy 3 (APG3) autophagy-related protein 3 autophagy-related protein 3a autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 uncharacterized LOC100240689 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3-like uncharacterized protein autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3 autophagy-related protein 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 3
ath04144 Endocytosis 2
ath04145 Phagosome 2
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 5
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 7
zma04144 Endocytosis 3
zma04145 Phagosome 2
zma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 4
vvi04144 Endocytosis 4
vvi03250 Viral life cycle - HIV-1 3
vvi03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03250 Viral life cycle - HIV-1 4
tae03272 Virion - Hepatitis viruses 4
tae04144 Endocytosis 4
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 7
tae03250 Viral life cycle - HIV-1 4
tae03272 Virion - Hepatitis viruses 4
tae03050 Proteasome 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu03013 Nucleocytoplasmic transport 2
hvu04142 Lysosome 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 4
sbi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
cit03060 Protein export 2
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 3
nta04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836271 100814257 100787410 101249556 4327346 9270245 100240689 103860600 103850662 100264989 7465493 112326180 25491869 100415831 123181691 123439560 121204493 107900819 106401795 106422788 5725346 110431628 8081835 102587849 102615659 100820929 107772206 107794515
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