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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101251001   lysine--tRNA ligase 
 sly-r.6   101251001   lysine--tRNA ligase 
 sly-u.5   LysRS   lysine--tRNA ligase 
 sot-r.1   102581756   lysine--tRNA ligase 
 sot-r.1   102596211   lysine--tRNA ligase 
 nta-r.1   107831133   lysine--tRNA ligase, cytoplasmic-like 
 nta-r.1   107766274   lysine--tRNA ligase 
 nta-r.1   107775287   lysine--tRNA ligase 
 ath-u.5   ATKRS-1   lysyl-tRNA synthetase 1 
 gma-u.5   100785660   lysine--tRNA ligase, cytoplasmic 
 gma-u.5   100809106   lysine--tRNA ligase, cytoplasmic 
 gma-u.5   100789811   lysine--tRNA ligase, cytoplasmic 
 bra-r.6   103846034   lysine--tRNA ligase, cytoplasmic 
 bra-r.6   103846983   lysine--tRNA ligase, cytoplasmic 
 bra-r.6   103859404   lysine--tRNA ligase, cytoplasmic 
 vvi-u.5   100242505   lysine--tRNA ligase, cytoplasmic 
 vvi-u.5   100262532   lysine--tRNA ligase, cytoplasmic 
 ppo-u.5   7488956   lysine--tRNA ligase, cytoplasmic 
 ppo-u.5   18100479   lysine--tRNA ligase, cytoplasmic 
 mtr-u.5   11423898   lysine--tRNA ligase 
 mtr-u.5   112420969   lysine--tRNA ligase-like 
 mtr-u.5   11443601   lysine--tRNA ligase, cytoplasmic 
 ghi-r.1   107896796   lysine--tRNA ligase, cytoplasmic 
 ghi-r.1   107910269   lysine--tRNA ligase, cytoplasmic 
 ghi-r.1   107914617   lysine--tRNA ligase, cytoplasmic 
 bna-r.1   106351199   lysine--tRNA ligase, cytoplasmic 
 bna-r.1   106349354   lysine--tRNA ligase, cytoplasmic-like 
 bna-r.1   106353060   lysine--tRNA ligase, cytoplasmic 
 cit-r.1   102615402   lysine--tRNA ligase, cytoplasmic 
 osa-u.5   4333345   lysine--tRNA ligase-like 
 zma-u.5   100273907   Lysine--tRNA ligase cytoplasmic 
 zma-u.5   103654174   lysine--tRNA ligase 
 tae-r.2   123095773   lysine--tRNA ligase 
 tae-r.2   123090755   lysine--tRNA ligase 
 tae-r.2   123094290   lysine--tRNA ligase 
 hvu-r.1   123447250   lysine--tRNA ligase-like 
 hvu-r.1   123452731   lysine--tRNA ligase 
 sbi-r.1   8063004   lysine--tRNA ligase 
 bdi-r.1   100844748   lysine--tRNA ligase 
 bdi-r.1   100844722   lysine--tRNA ligase 
 cre-r.1   CHLRE_03g160500v5   uncharacterized protein 

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Top 50 coexpressed genes to 101251001 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101251001 (sly-u.5 coexpression data)

CoexMap"101251001"


slyLOC101251001 | Entrez gene ID : 101251001      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 1 3 3 2 2 3 3 3 1 1 2 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00970 [list] [network] Aminoacyl-tRNA biosynthesis (114 genes)
GO BP
GO:0006430 [list] [network] lysyl-tRNA aminoacylation  (3 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004824 [list] [network] lysine-tRNA ligase activity  (3 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (29 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004241405.1 [sequence] [blastp]
XP_069154913.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 3  (predict for XP_004241405.1)
cyto 7,  nucl 3  (predict for XP_069154913.1)
Subcellular
localization
TargetP
other 7  (predict for XP_004241405.1)
other 7  (predict for XP_069154913.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101251001
sly-r.6
for
101251001
sly-u.5
for
LysRS
sot-r.1
for
102581756
sot-r.1
for
102596211
nta-r.1
for
107831133
nta-r.1
for
107766274
nta-r.1
for
107775287
ath-u.5
for
ATKRS-1
gma-u.5
for
100785660
gma-u.5
for
100809106
gma-u.5
for
100789811
bra-r.6
for
103846034
bra-r.6
for
103846983
bra-r.6
for
103859404
vvi-u.5
for
100242505
vvi-u.5
for
100262532
ppo-u.5
for
7488956
ppo-u.5
for
18100479
mtr-u.5
for
11423898
mtr-u.5
for
112420969
mtr-u.5
for
11443601
ghi-r.1
for
107896796
ghi-r.1
for
107910269
ghi-r.1
for
107914617
bna-r.1
for
106351199
bna-r.1
for
106349354
bna-r.1
for
106353060
cit-r.1
for
102615402
osa-u.5
for
4333345
zma-u.5
for
100273907
zma-u.5
for
103654174
tae-r.2
for
123095773
tae-r.2
for
123090755
tae-r.2
for
123094290
hvu-r.1
for
123447250
hvu-r.1
for
123452731
sbi-r.1
for
8063004
bdi-r.1
for
100844748
bdi-r.1
for
100844722
cre-r.1
for
CHLRE_03g160500v5


Ortholog ID: 3006
Species sly sly sot sot nta nta nta ath gma gma gma bra bra bra vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC101251001 LysRS LOC102581756 LOC102596211 LOC107831133 LOC107766274 LOC107775287 ATKRS-1 LOC100785660 LOC100809106 LOC100789811 LOC103846034 LOC103846983 LOC103859404 LOC100242505 LOC100262532 LOC7488956 LOC18100479 LOC11423898 LOC112420969 LOC11443601 LOC107914617 LOC107890953 LOC107937050 LOC106351199 LOC106349354 LOC106419210 LOC102615402 LOC4333345 LOC100273907 LOC103654174 LOC123090755 LOC123094290 LOC123123224 LOC123447250 LOC123452731 LOC8063004 LOC100844748 LOC100844722 CHLRE_03g160500v5
Function* lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase, cytoplasmic-like lysine--tRNA ligase lysine--tRNA ligase lysyl-tRNA synthetase 1 lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase lysine--tRNA ligase-like lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic-like lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase-like Lysine--tRNA ligase cytoplasmic lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase-like lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04070 Phosphatidylinositol signaling system 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr00500 Starch and sucrose metabolism 3
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
mtr04141 Protein processing in endoplasmic reticulum 3
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 7
ghi00261 Monobactam biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 8
ghi00908 Zeatin biosynthesis 6
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 8
ghi00908 Zeatin biosynthesis 6
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna00061 Fatty acid biosynthesis 2
bna00780 Biotin metabolism 2
bna01212 Fatty acid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna00061 Fatty acid biosynthesis 2
bna00780 Biotin metabolism 2
bna01212 Fatty acid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03030 DNA replication 2
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 13
tae00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 14
tae00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03010 Ribosome 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 6
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101251001 778357 102581756 102596211 107831133 107766274 107775287 820343 100785660 100809106 100789811 103846034 103846983 103859404 100242505 100262532 7488956 18100479 11423898 112420969 11443601 107914617 107890953 107937050 106351199 106349354 106419210 102615402 4333345 100273907 103654174 123090755 123094290 123123224 123447250 123452731 8063004 100844748 100844722 5722988
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