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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8063004   lysine--tRNA ligase 
 zma-u.5   103654174   lysine--tRNA ligase 
 zma-u.5   100273907   Lysine--tRNA ligase cytoplasmic 
 osa-u.5   4333345   lysine--tRNA ligase-like 
 ath-u.5   ATKRS-1   lysyl-tRNA synthetase 1 
 gma-u.5   100789811   lysine--tRNA ligase, cytoplasmic 
 gma-u.5   100809106   lysine--tRNA ligase, cytoplasmic 
 gma-u.5   100785660   lysine--tRNA ligase, cytoplasmic 
 sly-u.5   101251001   lysine--tRNA ligase 
 sly-u.5   LysRS   lysine--tRNA ligase 
 vvi-u.5   100262532   lysine--tRNA ligase, cytoplasmic 
 vvi-u.5   100242505   lysine--tRNA ligase, cytoplasmic 
 ppo-u.5   18100479   lysine--tRNA ligase, cytoplasmic 
 ppo-u.5   7488956   lysine--tRNA ligase, cytoplasmic 
 mtr-u.5   112420969   lysine--tRNA ligase-like 
 mtr-u.5   11423898   lysine--tRNA ligase 
 mtr-u.5   11443601   lysine--tRNA ligase, cytoplasmic 

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Top 50 coexpressed genes to 8063004 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8063004 (sbi-r.1 coexpression data)

CoexMap"8063004"


sbiLOC8063004 | Entrez gene ID : 8063004      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 3 2 2 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi00970 [list] [network] Aminoacyl-tRNA biosynthesis (105 genes)
GO BP
GO:0006430 [list] [network] lysyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (856 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0004824 [list] [network] lysine-tRNA ligase activity  (2 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (27 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2084 genes)  IEA  
Protein XP_002464277.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_002464277.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002464277.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8063004

.
zma-u.5
for
103654174

.
zma-u.5
for
100273907

.
osa-u.5
for
4333345

.
ath-u.5
for
ATKRS-1

.
gma-u.5
for
100789811

.
gma-u.5
for
100809106

.
gma-u.5
for
100785660

.
sly-u.5
for
101251001

.
sly-u.5
for
LysRS

.
vvi-u.5
for
100262532

.
vvi-u.5
for
100242505

.
ppo-u.5
for
18100479

.
ppo-u.5
for
7488956

.
mtr-u.5
for
112420969

.
mtr-u.5
for
11423898

.
mtr-u.5
for
11443601

.


Ortholog ID: 3006
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol ATKRS-1 LOC100789811 LOC100809106 LysRS LOC101251001 LOC4333345 LOC103654174 LOC100273907 LOC103846983 LOC103846034 LOC100242505 LOC100262532 LOC7488956 LOC18100479 LOC112420969 LOC11443601 LOC123094290 LOC123123224 LOC123452731 LOC123447250 LOC107890953 LOC107937050 LOC106419210 LOC106349354 CHLRE_03g160500v5 LOC8063004 LOC102596211 LOC102581756 LOC102615402 LOC100844722 LOC100844748 LOC107766274 LOC107775287
Function* lysyl-tRNA synthetase 1 lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase-like lysine--tRNA ligase Lysine--tRNA ligase cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase-like lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase-like lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase, cytoplasmic-like uncharacterized protein lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase, cytoplasmic lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase lysine--tRNA ligase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03030 DNA replication 2
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr00500 Starch and sucrose metabolism 3
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
mtr04141 Protein processing in endoplasmic reticulum 3
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 14
tae00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03010 Ribosome 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 8
ghi00908 Zeatin biosynthesis 6
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 8
ghi00908 Zeatin biosynthesis 6
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna00061 Fatty acid biosynthesis 2
bna00780 Biotin metabolism 2
bna01212 Fatty acid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 6
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04070 Phosphatidylinositol signaling system 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820343 100789811 100809106 778357 101251001 4333345 103654174 100273907 103846983 103846034 100242505 100262532 7488956 18100479 112420969 11443601 123094290 123123224 123452731 123447250 107890953 107937050 106419210 106349354 5722988 8063004 102596211 102581756 102615402 100844722 100844748 107766274 107775287
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