ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101252312	uncharacterized LOC101252312
sly-r.6	101252312	uncharacterized LOC101252312
sly-m.5	101252312	uncharacterized LOC101252312
sly-u.5	101249354	uncharacterized LOC101249354
sot-r.1	102587819	uncharacterized LOC102587819
sot-r.1	102590970	uncharacterized LOC102590970
nta-r.1	107826361	uncharacterized LOC107826361
nta-r.1	107805493	uncharacterized LOC107805493
nta-r.1	107780433	uncharacterized LOC107780433
ath-u.5	AT1G19330	histone deacetylase complex subunit
ath-u.5	AT1G75060	histone deacetylase complex subunit
gma-u.5	100784573	histone deacetylase complex subunit SAP30-like protein
gma-u.5	100806535	uncharacterized LOC100806535
gma-u.5	100809195	uncharacterized LOC100809195
bra-r.6	103842651	uncharacterized LOC103842651
bra-r.6	103831967	uncharacterized LOC103831967
vvi-u.5	100247103	uncharacterized LOC100247103
vvi-u.5	100258615	uncharacterized LOC100258615
vvi-u.5	100251235	uncharacterized LOC100251235
ppo-u.5	18097043	uncharacterized LOC18097043
mtr-u.5	25490176	uncharacterized LOC25490176
mtr-u.5	25482104	uncharacterized LOC25482104
ghi-r.1	121223750	uncharacterized LOC121223750
ghi-r.1	107890688	uncharacterized LOC107890688
ghi-r.1	107896475	uncharacterized LOC107896475
bna-r.1	106444602	uncharacterized LOC106444602
cit-r.1	102621761	uncharacterized LOC102621761
cit-r.1	102623550	hypothetical protein
osa-u.5	4331195	uncharacterized LOC4331195
osa-u.5	4335053	uncharacterized LOC4335053
osa-u.5	4348437	uncharacterized LOC4348437
zma-u.5	100384613	uncharacterized LOC100384613
zma-u.5	100276938	uncharacterized LOC100276938
tae-r.2	123050918	uncharacterized LOC123050918
tae-r.2	123043015	uncharacterized LOC123043015
tae-r.2	123186877	uncharacterized LOC123186877
hvu-r.1	123431443	uncharacterized LOC123431443
sbi-r.1	8077149	uncharacterized LOC8077149
bdi-r.1	100843116	uncharacterized LOC100843116
cre-r.1	CHLRE_01g051450v5	uncharacterized protein
cre-r.1	CHLRE_17g722050v5	uncharacterized protein

Top 50 coexpressed genes to 101252312 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101252312 (sly-u.5 coexpression data)

CoexMap"101252312"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1608 genes)

IEA

GO CC

GO:0000118 [list] [network] histone deacetylase complex

(40 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity	(132 genes)	IEA
GO:0005515 [list] [network] protein binding	(3982 genes)	IEA

Protein

XP_004245585.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 4, nucl 1

(predict for XP_004245585.1)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for XP_004245585.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101252312	sly-r.6 for 101252312	sly-m.5 for 101252312	sly-u.5 for 101249354	sot-r.1 for 102587819	sot-r.1 for 102590970	nta-r.1 for 107826361	nta-r.1 for 107805493	nta-r.1 for 107780433	ath-u.5 for AT1G19330	ath-u.5 for AT1G75060	gma-u.5 for 100784573	gma-u.5 for 100806535	gma-u.5 for 100809195	bra-r.6 for 103842651	bra-r.6 for 103831967	vvi-u.5 for 100247103	vvi-u.5 for 100258615	vvi-u.5 for 100251235	ppo-u.5 for 18097043	mtr-u.5 for 25490176	mtr-u.5 for 25482104	ghi-r.1 for 121223750	ghi-r.1 for 107890688	ghi-r.1 for 107896475	bna-r.1 for 106444602	cit-r.1 for 102621761	cit-r.1 for 102623550	osa-u.5 for 4331195	osa-u.5 for 4335053	osa-u.5 for 4348437	zma-u.5 for 100384613	zma-u.5 for 100276938	tae-r.2 for 123050918	tae-r.2 for 123043015	tae-r.2 for 123186877	hvu-r.1 for 123431443	sbi-r.1 for 8077149	bdi-r.1 for 100843116	cre-r.1 for CHLRE_01g051450v5	cre-r.1 for CHLRE_17g722050v5

Ortholog

Ortholog ID: 2107

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC101252312

uncharacterized LOC101249354

uncharacterized LOC102587819

uncharacterized LOC102590970

uncharacterized LOC107826361

uncharacterized LOC107805493

uncharacterized LOC107780433

histone deacetylase complex subunit

histone deacetylase complex subunit SAP30-like protein

uncharacterized LOC100806535

histone deacetylase complex subunit AFR2-like

uncharacterized LOC103842651

uncharacterized LOC103831967

uncharacterized LOC103852930

uncharacterized LOC100247103

uncharacterized LOC100258615

uncharacterized LOC100251235

uncharacterized LOC7472754

uncharacterized LOC7483776

uncharacterized LOC25490176

uncharacterized LOC25482104

uncharacterized LOC107890688

uncharacterized LOC107910170

uncharacterized LOC107947041

uncharacterized LOC106444602

uncharacterized LOC106373928

uncharacterized BNAC05G14990D

uncharacterized LOC102621761

hypothetical protein

uncharacterized LOC4331195

uncharacterized LOC4335053

uncharacterized LOC4348437

uncharacterized LOC100384613

uncharacterized LOC100276938

uncharacterized LOC123050918

uncharacterized LOC123043015

uncharacterized LOC123186877

uncharacterized LOC123431443

uncharacterized LOC8077149

uncharacterized LOC100843116

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	5
sot00380	Tryptophan metabolism	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma04136	Autophagy - other	2
gma04382	Cornified envelope formation	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma04136	Autophagy - other	2
gma04382	Cornified envelope formation	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04145	Phagosome	4
vvi04517	IgSF CAM signaling	4
vvi04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	8
tae04517	IgSF CAM signaling	8
tae04814	Motor proteins	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	3
tae04517	IgSF CAM signaling	3
tae04814	Motor proteins	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	3
tae00260	Glycine, serine and threonine metabolism	2
tae00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04130	SNARE interactions in vesicular transport	2
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	7

Expression

Expression pattern

Entrez Gene ID^*

101252312

101249354

102587819

102590970

107826361

107805493

107780433

838515

843844

100784573

100806535

100787225

103842651

103831967

103852930

100247103

100258615

100251235

7472754

7483776

25490176

25482104

107890688

107910170

107947041

106444602

106373928

106401550

102621761

102623550

4331195

4335053

4348437

100384613

100276938

123050918

123043015

123186877

123431443

8077149

100843116

5715757

66057032

The preparation time of this page was 0.1 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	3	2	3	1	2	3	1	2	3	2	3	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101252312 (sly-u.5 coexpression data)

Top 50 enrichment test to 101252312 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**