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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101252526   pentatricopeptide repeat-containing protein At1g71490 
 sly-r.6   101252526   pentatricopeptide repeat-containing protein At1g71490 
 ath-u.5   AT1G22830   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT1G71490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100782216   pentatricopeptide repeat-containing protein At1g71490 
 gma-u.5   100803016   pentatricopeptide repeat-containing protein At1g71490 
 vvi-u.5   100265403   pentatricopeptide repeat-containing protein At1g71490 
 ppo-u.5   112325318   pentatricopeptide repeat-containing protein At1g71490 
 mtr-u.5   11427461   pentatricopeptide repeat-containing protein At1g71490 
 osa-u.5   9266464   pentatricopeptide repeat-containing protein At1g71490 
 zma-u.5   103647267   pentatricopeptide repeat-containing protein At1g71490 

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Top 50 coexpressed genes to 101252526 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101252526 (sly-u.5 coexpression data)

CoexMap"101252526"


slyLOC101252526 | Entrez gene ID : 101252526      
Species sly ath gma vvi ppo mtr osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 2 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004247672.1 [sequence] [blastp]
XP_010326678.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto_mito 1  (predict for XP_004247672.1)
chlo 9,  nucl 1,  cyto_mito 1  (predict for XP_010326678.1)
Subcellular
localization
TargetP
chlo 5,  mito 3  (predict for XP_004247672.1)
chlo 5,  mito 3  (predict for XP_010326678.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101252526

.
sly-r.6
for
101252526

.
ath-u.5
for
AT1G22830

.
ath-u.5
for
AT1G71490

.
gma-u.5
for
100782216

.
gma-u.5
for
100803016

.
vvi-u.5
for
100265403

.
ppo-u.5
for
112325318

.
mtr-u.5
for
11427461

.
osa-u.5
for
9266464

.
zma-u.5
for
103647267

.


Ortholog ID: 9227
Species ath ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sot sot cit bdi nta nta
Symbol AT1G71490 AT1G22830 LOC100782216 LOC100803016 LOC101252526 LOC9266464 LOC103647267 LOC103840825 LOC103830844 LOC100265403 LOC112325318 LOC11427461 LOC123149114 LOC123168091 LOC123411763 LOC121203757 LOC121213744 LOC106397736 LOC106429772 LOC102597038 LOC102604752 LOC102616106 LOC104581278 LOC107790853 LOC107817792
Function* Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g22830 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490-like pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g22830-like pentatricopeptide repeat-containing protein At1g22830 pentatricopeptide repeat-containing protein At1g71490-like pentatricopeptide repeat-containing protein At1g71490-like pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490 pentatricopeptide repeat-containing protein At1g71490-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843490 838888 100782216 100803016 101252526 9266464 103647267 103840825 103830844 100265403 112325318 11427461 123149114 123168091 123411763 121203757 121213744 106397736 106429772 102597038 102604752 102616106 104581278 107790853 107817792
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