ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101252682	J domain-containing protein required for chloroplast accumulation response 1
sly-r.6	101252682	J domain-containing protein required for chloroplast accumulation response 1
sly-u.5	101265552	uncharacterized LOC101265552
sly-u.5	101260243	auxilin-related protein 2-like
sly-u.5	101246463	auxilin-related protein 2
sot-r.1	102588565	auxilin-related protein 2-like
sot-r.1	102591785	J domain-containing protein required for chloroplast accumulation response 1
sot-r.1	102597179	auxilin-related protein 1
nta-r.1	107770755	auxilin-related protein 1-like
nta-r.1	107801155	uncharacterized LOC107801155
nta-r.1	107803294	auxilin-related protein 1
ath-u.5	AT4G12770	Chaperone DnaJ-domain superfamily protein
ath-u.5	AT4G12780	Chaperone DnaJ-domain superfamily protein
ath-u.5	AT1G21660	Chaperone DnaJ-domain superfamily protein
gma-u.5	100820241	J domain-containing protein required for chloroplast accumulation response 1
gma-u.5	100820002	J domain-containing protein required for chloroplast accumulation response 1
gma-u.5	100814144	auxilin-related protein 2
bra-r.6	103831970	J domain-containing protein required for chloroplast accumulation response 1
bra-r.6	103834175	auxilin-related protein 2
vvi-u.5	100853821	auxilin-related protein 2
ppo-u.5	18105018	J domain-containing protein required for chloroplast accumulation response 1
ppo-u.5	7469358	auxilin-related protein 1
ppo-u.5	18096501	auxilin-related protein 1
mtr-u.5	11420732	auxilin-related protein 2
mtr-u.5	11435702	auxilin-related protein 2-like
mtr-u.5	25489696	auxilin-related protein 1
ghi-r.1	107905406	J domain-containing protein required for chloroplast accumulation response 1
ghi-r.1	107916783	J domain-containing protein required for chloroplast accumulation response 1
ghi-r.1	107923945	auxilin-related protein 2
bna-r.1	111211882	J domain-containing protein required for chloroplast accumulation response 1
bna-r.1	111213590	auxilin-related protein 2
cit-r.1	102625431	J domain-containing protein required for chloroplast accumulation response 1
cit-r.1	102620227	auxilin-related protein 2
cit-r.1	102618123	auxilin-related protein 1
osa-u.5	4326280	auxilin-related protein 1
osa-u.5	9272429	auxilin-related protein 2
osa-u.5	4331953	J domain-containing protein required for chloroplast accumulation response 1
zma-u.5	100279927	uncharacterized LOC100279927
zma-u.5	100278637	J domain-containing protein required for chloroplast accumulation response 1
zma-u.5	103650168	auxilin-related protein 1
tae-r.2	123098386	J domain-containing protein required for chloroplast accumulation response 1
tae-r.2	123086208	auxilin-related protein 2
tae-r.2	123091598	auxilin-related protein 2
hvu-r.1	123449424	J domain-containing protein required for chloroplast accumulation response 1
hvu-r.1	123450546	uncharacterized LOC123450546
hvu-r.1	123448410	auxilin-related protein 2-like
sbi-r.1	8075339	auxilin-related protein 1
sbi-r.1	8068810	auxilin-related protein 1
sbi-r.1	8082075	auxilin-related protein 2
bdi-r.1	100845320	auxilin-related protein 2
bdi-r.1	100833432	J domain-containing protein required for chloroplast accumulation response 1
bdi-r.1	100832373	auxilin-related protein 1
cre-r.1	CHLRE_12g511650v5	uncharacterized protein

Top 50 coexpressed genes to 101252682 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101252682 (sly-u.5 coexpression data)

CoexMap"101252682"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0072318 [list] [network] clathrin coat disassembly	(6 genes)	IEA
GO:0072583 [list] [network] clathrin-dependent endocytosis	(31 genes)	IEA

GO CC

GO:0031982 [list] [network] vesicle	(322 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(5127 genes)	IEA
GO:0043231 [list] [network] intracellular membrane-bounded organelle	(5687 genes)	IEA

GO MF

GO:0030276 [list] [network] clathrin binding

(39 genes)

IEA

Protein

XP_004238235.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, cyto 1

(predict for XP_004238235.2)

Subcellular
localization
TargetP

other 8

(predict for XP_004238235.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101252682	sly-r.6 for 101252682	sly-u.5 for 101265552	sly-u.5 for 101260243	sly-u.5 for 101246463	sot-r.1 for 102588565	sot-r.1 for 102591785	sot-r.1 for 102597179	nta-r.1 for 107770755	nta-r.1 for 107801155	nta-r.1 for 107803294	ath-u.5 for AT4G12770	ath-u.5 for AT4G12780	ath-u.5 for AT1G21660	gma-u.5 for 100820241	gma-u.5 for 100820002	gma-u.5 for 100814144	bra-r.6 for 103831970	bra-r.6 for 103834175	vvi-u.5 for 100853821	ppo-u.5 for 18105018	ppo-u.5 for 7469358	ppo-u.5 for 18096501	mtr-u.5 for 11420732	mtr-u.5 for 11435702	mtr-u.5 for 25489696	ghi-r.1 for 107905406	ghi-r.1 for 107916783	ghi-r.1 for 107923945	bna-r.1 for 111211882	bna-r.1 for 111213590	cit-r.1 for 102625431	cit-r.1 for 102620227	cit-r.1 for 102618123	osa-u.5 for 4326280	osa-u.5 for 9272429	osa-u.5 for 4331953	zma-u.5 for 100279927	zma-u.5 for 100278637	zma-u.5 for 103650168	tae-r.2 for 123098386	tae-r.2 for 123086208	tae-r.2 for 123091598	hvu-r.1 for 123449424	hvu-r.1 for 123450546	hvu-r.1 for 123448410	sbi-r.1 for 8075339	sbi-r.1 for 8068810	sbi-r.1 for 8082075	bdi-r.1 for 100845320	bdi-r.1 for 100833432	bdi-r.1 for 100832373	cre-r.1 for CHLRE_12g511650v5

Ortholog

Ortholog ID: 755

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

JAC1

Function^*