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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101252808   E3 ubiquitin-protein ligase APD2 
 sly-r.6   101252808   E3 ubiquitin-protein ligase APD2 
 sly-u.5   101252132   E3 ubiquitin-protein ligase APD4 
 ath-u.5   APD1   RING/U-box superfamily protein 
 ath-u.5   APD2   RING/U-box superfamily protein 
 gma-u.5   100777075   E3 ubiquitin-protein ligase APD1 
 gma-u.5   100777141   E3 ubiquitin-protein ligase APD2 
 gma-u.5   100791057   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100258653   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100248821   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100247198   E3 ubiquitin-protein ligase APD2 
 ppo-u.5   18104819   E3 ubiquitin-protein ligase APD2 

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Top 50 coexpressed genes to 101252808 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101252808 (sly-u.5 coexpression data)

CoexMap"101252808"


slyLOC101252808 | Entrez gene ID : 101252808      
Species sly ath gma vvi ppo sbi nta mtr osa cre cit bra hvu bdi sot zma tae bna ghi
Paralog 3 2 3 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007049 [list] [network] cell cycle  (319 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (334 genes)  IEA  
GO CC
GO:0009705 [list] [network] plant-type vacuole membrane  (49 genes)  IEA  
GO:0005768 [list] [network] endosome  (168 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (194 genes)  IEA  
Protein XP_004246765.2 [sequence] [blastp]
XP_010326076.2 [sequence] [blastp]
XP_010326077.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 2,  nucl_plas 2,  plas 1,  E.R. 1,  cysk_nucl 1,  cyto_pero 1,  E.R._plas 1  (predict for XP_004246765.2)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_010326076.2)
vacu 2,  E.R. 2,  E.R._vacu 2,  chlo 1,  plas 1,  cyto_E.R. 1  (predict for XP_010326077.2)
Subcellular
localization
TargetP
other 8  (predict for XP_004246765.2)
other 9  (predict for XP_010326076.2)
other 8  (predict for XP_010326077.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101252808

.
sly-r.6
for
101252808

.
sly-u.5
for
101252132

.
ath-u.5
for
APD1

.
ath-u.5
for
APD2

.
gma-u.5
for
100777075

.
gma-u.5
for
100777141

.
gma-u.5
for
100791057

.
vvi-u.5
for
100258653

.
vvi-u.5
for
100248821

.
vvi-u.5
for
100247198

.
ppo-u.5
for
18104819

.


Ortholog ID: 1842
Species ath gma gma sly sly bra vvi vvi ghi ghi bna bna cre cre sot sot cit nta nta
Symbol APD2 LOC100791057 LOC100777075 LOC101252132 LOC101252808 LOC103855419 LOC100258653 LOC100247198 LOC107958061 LOC107906620 LOC106358274 LOC106438161 CHLRE_01g000750v5 CHLRE_16g649150v5 LOC102599744 LOC102603607 LOC102622796 LOC107831062 LOC107831645
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD4 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD1-like uncharacterized protein uncharacterized protein E3 ubiquitin-protein ligase MYLIP-A uncharacterized LOC102603607 E3 ubiquitin-protein ligase APD2-like E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
cre00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 6
sot00520 Amino sugar and nucleotide sugar metabolism 5
sot01250 Biosynthesis of nucleotide sugars 5
sot00052 Galactose metabolism 3
sot00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831860 100791057 100777075 101252132 101252808 103855419 100258653 100247198 107958061 107906620 106358274 106438161 66051883 5723817 102599744 102603607 102622796 107831062 107831645
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