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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100247198   E3 ubiquitin-protein ligase APD2 
 vvi-r.5   100247198   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100245723   E3 ubiquitin-protein ligase APD1 
 vvi-u.5   100248821   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100258653   E3 ubiquitin-protein ligase APD2 
 ath-u.5   APD1   RING/U-box superfamily protein 
 ath-u.5   APD2   RING/U-box superfamily protein 
 gma-u.5   100777075   E3 ubiquitin-protein ligase APD1 
 gma-u.5   100777141   E3 ubiquitin-protein ligase APD2 
 gma-u.5   100791057   E3 ubiquitin-protein ligase APD2 
 ppo-u.5   7466072   E3 ubiquitin-protein ligase APD2 
 sly-u.5   101252132   E3 ubiquitin-protein ligase APD4 
 sly-u.5   101252808   E3 ubiquitin-protein ligase APD2 

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Top 50 coexpressed genes to 100247198 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100247198 (vvi-u.5 coexpression data)

CoexMap"100247198"


vviLOC100247198 | Entrez gene ID : 100247198      
Species vvi ath gma ppo sly bdi mtr bra hvu cit bna sbi ghi osa sot nta cre tae zma
Paralog 5 2 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_002264526.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_002264526.1)
Subcellular
localization
TargetP
chlo 9,  other 3  (predict for XP_002264526.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100247198
vvi-r.5
for
100247198
vvi-u.5
for
100245723
vvi-u.5
for
100248821
vvi-u.5
for
100258653
ath-u.5
for
APD1
ath-u.5
for
APD2
gma-u.5
for
100777075
gma-u.5
for
100777141
gma-u.5
for
100791057
ppo-u.5
for
7466072
sly-u.5
for
101252132
sly-u.5
for
101252808


Ortholog ID: 1842
Species vvi vvi ath gma gma bra ghi ghi bna bna cit sly sly sot sot nta nta cre cre
Symbol LOC100258653 LOC100247198 APD2 LOC100791057 LOC100777075 LOC103855419 LOC107958061 LOC107906620 LOC106358274 LOC106438161 LOC102622796 LOC101252132 LOC101252808 LOC102599744 LOC102603607 LOC107831062 LOC107831645 CHLRE_01g000750v5 CHLRE_16g649150v5
Function* E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 RING/U-box superfamily protein E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD1-like E3 ubiquitin-protein ligase APD2-like E3 ubiquitin-protein ligase APD4 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase MYLIP-A uncharacterized LOC102603607 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2-like uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 6
sot00520 Amino sugar and nucleotide sugar metabolism 5
sot01250 Biosynthesis of nucleotide sugars 5
sot00052 Galactose metabolism 3
sot00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
cre00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100258653 100247198 831860 100791057 100777075 103855419 107958061 107906620 106358274 106438161 102622796 101252132 101252808 102599744 102603607 107831062 107831645 66051883 5723817
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