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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101253512   nuclear pore complex protein NUP85 
 sly-r.6   101253512   nuclear pore complex protein NUP85 
 ath-u.5   AT4G32910   nuclear pore complex Nup85-like protein 
 gma-u.5   100785741   nuclear pore complex protein NUP85 
 vvi-u.5   100256006   nuclear pore complex protein NUP85 
 ppo-u.5   7476700   nuclear pore complex protein NUP85 
 mtr-u.5   11434621   nuclear pore complex protein NUP85 
 osa-u.5   4326176   nuclear pore complex protein NUP85 
 zma-u.5   100381924   Nuclear pore complex protein NUP85 

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Top 50 coexpressed genes to 101253512 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101253512 (sly-u.5 coexpression data)

CoexMap"101253512"


slyLOC101253512 | Entrez gene ID : 101253512      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03013 [list] [network] Nucleocytoplasmic transport (106 genes)
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (32 genes)  IEA  
GO:0006606 [list] [network] protein import into nucleus  (46 genes)  IEA  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (243 genes)  IEA  
GO CC
GO:0031080 [list] [network] nuclear pore outer ring  (7 genes)  IEA  
GO MF
GO:0017056 [list] [network] structural constituent of nuclear pore  (21 genes)  IEA  
Protein XP_004245163.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 2  (predict for XP_004245163.2)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_004245163.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101253512
sly-r.6
for
101253512
ath-u.5
for
AT4G32910
gma-u.5
for
100785741
vvi-u.5
for
100256006
ppo-u.5
for
7476700
mtr-u.5
for
11434621
osa-u.5
for
4326176
zma-u.5
for
100381924


Ortholog ID: 10244
Species sly sot nta nta ath gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC101253512 LOC102591614 LOC107825191 LOC107783626 AT4G32910 LOC100785741 LOC103850288 LOC100256006 LOC7476700 LOC11434621 LOC107897098 LOC107901527 LOC106364969 LOC106377577 LOC102607442 LOC4326176 LOC100381924 LOC123079030 LOC123070626 LOC123444391 LOC8075564 LOC100830016 CHLRE_08g383650v5
Function* nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex Nup85-like protein nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85-like nuclear pore complex protein NUP85 nuclear pore complex protein NUP85-like nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 Nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 nuclear pore complex protein NUP85 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03013 Nucleocytoplasmic transport 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma03440 Homologous recombination 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 8
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 3
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 3
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna00500 Starch and sucrose metabolism 4
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma04120 Ubiquitin mediated proteolysis 3
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03015 mRNA surveillance pathway 4
tae03020 RNA polymerase 4
tae03013 Nucleocytoplasmic transport 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 7
tae03015 mRNA surveillance pathway 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03040 Spliceosome 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03013 Nucleocytoplasmic transport 2
sbi03050 Proteasome 2
sbi03060 Protein export 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101253512 102591614 107825191 107783626 829427 100785741 103850288 100256006 7476700 11434621 107897098 107901527 106364969 106377577 102607442 4326176 100381924 123079030 123070626 123444391 8075564 100830016 5719819
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