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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101253808   mediator of RNA polymerase II transcription subunit 28-like 
 sly-r.6   101253808   mediator of RNA polymerase II transcription subunit 28-like 
 sly-u.5   101265053   mediator of RNA polymerase II transcription subunit 28-like 
 ath-u.5   AT3G52860   mediator of RNA polymerase II transcription subunit-like protein 
 gma-u.5   100815419   mediator of RNA polymerase II transcription subunit 28 
 gma-u.5   100789247   mediator of RNA polymerase II transcription subunit 28 
 vvi-u.5   100246950   mediator of RNA polymerase II transcription subunit 28 
 ppo-u.5   7491295   mediator of RNA polymerase II transcription subunit 28 
 mtr-u.5   11437169   mediator of RNA polymerase II transcription subunit 28 
 osa-u.5   4337847   mediator of RNA polymerase II transcription subunit 28 
 zma-u.5   100276705   uncharacterized LOC100276705 

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Top 50 coexpressed genes to 101253808 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101253808 (sly-u.5 coexpression data)

CoexMap"101253808"


slyLOC101253808 | Entrez gene ID : 101253808      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (47 genes)  IEA  
GO MF
Protein XP_004244450.1 [sequence] [blastp]
XP_010324508.1 [sequence] [blastp]
XP_010324509.1 [sequence] [blastp]
XP_069144184.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  nucl_plas 3,  cyto 2,  cyto_E.R. 1,  chlo 1,  mito 1,  plas 1,  chlo_mito 1  (predict for XP_004244450.1)
cyto 4,  nucl 3,  nucl_plas 2,  mito 1,  chlo 1,  plas 1,  extr 1,  cyto_mito 1  (predict for XP_010324508.1)
cyto 4,  nucl 3,  nucl_plas 2,  mito 1,  chlo 1,  plas 1,  extr 1,  cyto_mito 1  (predict for XP_010324509.1)
cyto 4,  nucl 3,  nucl_plas 2,  mito 1,  chlo 1,  plas 1,  extr 1,  cyto_mito 1  (predict for XP_069144184.1)
Subcellular
localization
TargetP
scret 8  (predict for XP_004244450.1)
other 7,  mito 3  (predict for XP_010324508.1)
other 7,  mito 3  (predict for XP_010324509.1)
other 7,  mito 3  (predict for XP_069144184.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101253808
sly-r.6
for
101253808
sly-u.5
for
101265053
ath-u.5
for
AT3G52860
gma-u.5
for
100815419
gma-u.5
for
100789247
vvi-u.5
for
100246950
ppo-u.5
for
7491295
mtr-u.5
for
11437169
osa-u.5
for
4337847
zma-u.5
for
100276705


Ortholog ID: 8505
Species sly sly sot sot nta nta ath gma gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi
Symbol LOC101265053 LOC101253808 LOC102603486 LOC102588900 LOC107790132 LOC107828792 AT3G52860 LOC100815419 LOC100789247 LOC103841216 LOC100246950 LOC7491295 LOC11437169 LOC107946068 LOC107925676 LOC106367809 LOC106367931 LOC102610177 LOC4337847 LOC100276705 LOC123180563 LOC123191672 LOC123425898 LOC8076010 LOC100840919
Function* mediator of RNA polymerase II transcription subunit 28-like mediator of RNA polymerase II transcription subunit 28-like mediator of RNA polymerase II transcription subunit 28-like mediator of RNA polymerase II transcription subunit 28-like mediator of RNA polymerase II transcription subunit 28-like mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit-like protein mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28-like mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 uncharacterized LOC100276705 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28 mediator of RNA polymerase II transcription subunit 28
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 3
sly04120 Ubiquitin mediated proteolysis 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
zma03018 RNA degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03013 Nucleocytoplasmic transport 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101265053 101253808 102603486 102588900 107790132 107828792 824452 100815419 100789247 103841216 100246950 7491295 11437169 107946068 107925676 106367809 106367931 102610177 4337847 100276705 123180563 123191672 123425898 8076010 100840919
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