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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101256656   recQ-mediated genome instability protein 1-like 
 sly-r.6   101256656   recQ-mediated genome instability protein 1-like 
 sly-u.5   101258067   recQ-mediated genome instability protein 1-like 
 sot-r.1   102591019   recQ-mediated genome instability protein 1 
 nta-r.1   107825675   recQ-mediated genome instability protein 1-like 
 nta-r.1   107824513   recQ-mediated genome instability protein 1 
 ath-u.5   RMI1   recQ-mediated instability protein (DUF1767) 
 gma-u.5   100803734   recQ-mediated genome instability protein 1 
 bra-r.6   103837476   recQ-mediated genome instability protein 1 
 vvi-u.5   100244067   recQ-mediated genome instability protein 1 
 ppo-u.5   7463145   recQ-mediated genome instability protein 1 
 mtr-u.5   25502001   recQ-mediated genome instability protein 1 
 ghi-r.1   107926105   recQ-mediated genome instability protein 1-like 
 ghi-r.1   107953572   recQ-mediated genome instability protein 1 
 bna-r.1   106409608   recQ-mediated genome instability protein 1 
 cit-r.1   102624575   recQ-mediated genome instability protein 1 
 osa-u.5   4335680   recQ-mediated genome instability protein 1 
 zma-u.5   100274087   RecQ-mediated genome instability protein 1 
 tae-r.2   123053153   recQ-mediated genome instability protein 1 
 tae-r.2   123189067   recQ-mediated genome instability protein 1 
 tae-r.2   123045319   recQ-mediated genome instability protein 1 
 hvu-r.1   123426556   recQ-mediated genome instability protein 1 
 sbi-r.1   8070976   recQ-mediated genome instability protein 1 
 bdi-r.1   100828863   recQ-mediated genome instability protein 1 
 cre-r.1   CHLRE_17g712450v5   uncharacterized protein 

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Top 50 coexpressed genes to 101256656 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101256656 (sly-u.5 coexpression data)

CoexMap"101256656"


slyLOC101256656 | Entrez gene ID : 101256656      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 1 1 1 1 1 2 1 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03460 [list] [network] Fanconi anemia pathway (41 genes)
GO BP
GO:0000712 [list] [network] resolution of meiotic recombination intermediates  (8 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IEA  
GO CC
GO:0031422 [list] [network] RecQ family helicase-topoisomerase III complex  (2 genes)  IEA  
GO:0016604 [list] [network] nuclear body  (22 genes)  IEA  
GO MF
GO:0000166 [list] [network] nucleotide binding  (2632 genes)  IEA  
Protein XP_004252036.1 [sequence] [blastp]
XP_010313673.1 [sequence] [blastp]
XP_010313674.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  nucl_plas 3  (predict for XP_004252036.1)
cyto 4,  chlo 2,  cyto_plas 2,  nucl 1,  E.R. 1  (predict for XP_010313673.1)
cyto 4,  chlo 2,  cyto_plas 2,  nucl 1,  E.R. 1  (predict for XP_010313674.1)
Subcellular
localization
TargetP
other 8  (predict for XP_004252036.1)
other 9  (predict for XP_010313673.1)
other 9  (predict for XP_010313674.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101256656
sly-r.6
for
101256656
sly-u.5
for
101258067
sot-r.1
for
102591019
nta-r.1
for
107825675
nta-r.1
for
107824513
ath-u.5
for
RMI1
gma-u.5
for
100803734
bra-r.6
for
103837476
vvi-u.5
for
100244067
ppo-u.5
for
7463145
mtr-u.5
for
25502001
ghi-r.1
for
107926105
ghi-r.1
for
107953572
bna-r.1
for
106409608
cit-r.1
for
102624575
osa-u.5
for
4335680
zma-u.5
for
100274087
tae-r.2
for
123053153
tae-r.2
for
123189067
tae-r.2
for
123045319
hvu-r.1
for
123426556
sbi-r.1
for
8070976
bdi-r.1
for
100828863
cre-r.1
for
CHLRE_17g712450v5


Ortholog ID: 10416
Species sly sly sot nta nta ath gma bra vvi ppo mtr ghi ghi bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol LOC101256656 LOC101258067 LOC102591019 LOC107825675 LOC107824513 RMI1 LOC100803734 LOC103837476 LOC100244067 LOC7463145 LOC25502001 LOC107926105 LOC107953572 LOC106409608 LOC102624575 LOC4335680 LOC100274087 LOC123053153 LOC123189067 LOC123045319 LOC123426556 LOC8070976 LOC100828863 CHLRE_17g712450v5
Function* recQ-mediated genome instability protein 1-like recQ-mediated genome instability protein 1-like recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1-like recQ-mediated genome instability protein 1 recQ-mediated instability protein (DUF1767) recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1-like recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 RecQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 recQ-mediated genome instability protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03015 mRNA surveillance pathway 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 5
ath03460 Fanconi anemia pathway 4
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03460 Fanconi anemia pathway 3
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 6
ppo03430 Mismatch repair 5
ppo03420 Nucleotide excision repair 3
ppo03440 Homologous recombination 3
ppo03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi03440 Homologous recombination 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi03440 Homologous recombination 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 6
bna03440 Homologous recombination 5
bna03030 DNA replication 4
bna03420 Nucleotide excision repair 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03410 Base excision repair 3
bdi03420 Nucleotide excision repair 3
bdi03430 Mismatch repair 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101256656 101258067 102591019 107825675 107824513 836473 100803734 103837476 100244067 7463145 25502001 107926105 107953572 106409608 102624575 4335680 100274087 123053153 123189067 123045319 123426556 8070976 100828863 66056967
The preparation time of this page was 1.4 [sec].