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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   TRM3/4   TONNEAU1 recruiting motif 3/4 
 sly-r.6   TRM3/4   TONNEAU1 recruiting motif 3/4 
 sly-u.5   TRM1/2/3/4/5   TONNEAU1 recruiting motif 1/2/3/4/5 
 sot-r.1   102587798   protein LONGIFOLIA 2 
 sot-r.1   102579668   protein LONGIFOLIA 1 
 nta-r.1   107831982   protein LONGIFOLIA 1 
 nta-r.1   107810763   protein LONGIFOLIA 1 
 nta-r.1   107763080   protein LONGIFOLIA 1 
 ath-u.5   TRM3   LONGIFOLIA protein 
 ath-u.5   TRM4   LONGIFOLIA protein 
 gma-u.5   100809978   protein LONGIFOLIA 1 
 gma-u.5   100805643   protein LONGIFOLIA 2 
 gma-u.5   100787391   protein LONGIFOLIA 2 
 bra-r.6   103842692   protein LONGIFOLIA 1 
 bra-r.6   103835893   protein LONGIFOLIA 2 
 bra-r.6   103852888   protein LONGIFOLIA 1 
 vvi-u.5   100266999   protein LONGIFOLIA 1 
 vvi-u.5   100253543   protein LONGIFOLIA 1 
 ppo-u.5   18105756   protein LONGIFOLIA 1 
 ppo-u.5   7487104   protein LONGIFOLIA 1 
 ppo-u.5   7484578   protein LONGIFOLIA 1 
 mtr-u.5   25488714   protein LONGIFOLIA 1 
 ghi-r.1   107953485   protein LONGIFOLIA 1 
 ghi-r.1   107931455   protein LONGIFOLIA 2 
 ghi-r.1   121232092   protein LONGIFOLIA 1 
 bna-r.1   106369062   protein LONGIFOLIA 1 
 bna-r.1   106381368   protein LONGIFOLIA 1-like 
 bna-r.1   106361987   protein LONGIFOLIA 2 
 cit-r.1   102629389   protein LONGIFOLIA 1 
 cit-r.1   102610798   protein LONGIFOLIA 1 
 osa-u.5   4342218   protein LONGIFOLIA 1 
 zma-u.5   103647243   protein LONGIFOLIA 1 
 zma-u.5   100279500   uncharacterized LOC100279500 
 tae-r.2   123188851   protein LONGIFOLIA 1 
 tae-r.2   123052953   protein LONGIFOLIA 1 
 tae-r.2   123045116   protein LONGIFOLIA 1 
 hvu-r.1   123426359   protein LONGIFOLIA 1-like 
 sbi-r.1   8063864   protein LONGIFOLIA 1 
 bdi-r.1   100845831   protein LONGIFOLIA 1 

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Top 50 coexpressed genes to TRM3/4 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TRM3/4 (sly-u.5 coexpression data)

CoexMap"101257254"


slyTRM3/4 | Entrez gene ID : 101257254      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 3 3 2 3 1 3 3 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051513 [list] [network] regulation of monopolar cell growth  (3 genes)  IEA  
GO CC
GO MF
Protein XP_010318861.1 [sequence] [blastp]
XP_010318863.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_010318861.1)
nucl 9  (predict for XP_010318863.1)
Subcellular
localization
TargetP
other 9  (predict for XP_010318861.1)
other 9  (predict for XP_010318863.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
TRM3/4
sly-r.6
for
TRM3/4
sly-u.5
for
TRM1/2/3/4/5
sot-r.1
for
102587798
sot-r.1
for
102579668
nta-r.1
for
107831982
nta-r.1
for
107810763
nta-r.1
for
107763080
ath-u.5
for
TRM3
ath-u.5
for
TRM4
gma-u.5
for
100809978
gma-u.5
for
100805643
gma-u.5
for
100787391
bra-r.6
for
103842692
bra-r.6
for
103835893
bra-r.6
for
103852888
vvi-u.5
for
100266999
vvi-u.5
for
100253543
ppo-u.5
for
18105756
ppo-u.5
for
7487104
ppo-u.5
for
7484578
mtr-u.5
for
25488714
ghi-r.1
for
107953485
ghi-r.1
for
107931455
ghi-r.1
for
121232092
bna-r.1
for
106369062
bna-r.1
for
106381368
bna-r.1
for
106361987
cit-r.1
for
102629389
cit-r.1
for
102610798
osa-u.5
for
4342218
zma-u.5
for
103647243
zma-u.5
for
100279500
tae-r.2
for
123188851
tae-r.2
for
123052953
tae-r.2
for
123045116
hvu-r.1
for
123426359
sbi-r.1
for
8063864
bdi-r.1
for
100845831


Ortholog ID: 4149
Species sly sly sot sot nta nta nta ath ath gma gma gma bra bra bra vvi vvi ppo ppo ppo mtr ghi ghi ghi bna bna bna cit cit osa zma zma tae tae tae hvu sbi bdi
Symbol TRM3/4 TRM1/2/3/4/5 LOC102587798 LOC102579668 LOC107831982 LOC107763080 LOC107797922 TRM3 TRM4 LOC100805643 LOC100787391 LOC100775311 LOC103842692 LOC103835893 LOC103852888 LOC100266999 LOC100253543 LOC18105756 LOC7487104 LOC7484578 LOC25488714 LOC107953485 LOC107931455 LOC121206443 LOC106369062 LOC106381368 LOC106361987 LOC102629389 LOC102610798 LOC4342218 LOC103647243 LOC100279500 LOC123188851 LOC123052953 LOC123045116 LOC123426359 LOC8063864 LOC100845831
Function* TONNEAU1 recruiting motif 3/4 TONNEAU1 recruiting motif 1/2/3/4/5 protein LONGIFOLIA 2 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1-like LONGIFOLIA protein LONGIFOLIA protein protein LONGIFOLIA 2 protein LONGIFOLIA 2 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 2 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 2 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1-like protein LONGIFOLIA 2 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 uncharacterized LOC100279500 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1 protein LONGIFOLIA 1-like protein LONGIFOLIA 1 protein LONGIFOLIA 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 6
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 3
hvu04145 Phagosome 2
hvu04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00460 Cyanoamino acid metabolism 2
bdi00500 Starch and sucrose metabolism 2
bdi00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101257254 101262175 102587798 102579668 107831982 107763080 107797922 838443 843756 100805643 100787391 100775311 103842692 103835893 103852888 100266999 100253543 18105756 7487104 7484578 25488714 107953485 107931455 121206443 106369062 106381368 106361987 102629389 102610798 4342218 103647243 100279500 123188851 123052953 123045116 123426359 8063864 100845831
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