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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101257473   pentatricopeptide repeat-containing protein 
 sly-r.6   101257473   pentatricopeptide repeat-containing protein 
 sot-r.1   107062875   pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like 
 vvi-u.5   100852670   pentatricopeptide repeat-containing protein At4g13650 
 ppo-u.5   7468624   pentatricopeptide repeat-containing protein At4g13650 
 osa-u.5   107281139   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-u.5   9269267   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 hvu-r.1   123445665   pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like 

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Top 50 coexpressed genes to 101257473 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101257473 (sly-u.5 coexpression data)

CoexMap"101257473"


slyLOC101257473 | Entrez gene ID : 101257473    
Species sly sot vvi ppo osa hvu bdi nta tae bna ath zma cre mtr sbi gma bra ghi cit
Paralog 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001352387.1 [sequence] [blastp]
XP_004240374.1 [sequence] [blastp]
XP_069154788.1 [sequence] [blastp]
XP_069154789.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 4,  cyto_mito 2,  nucl 1  (predict for NP_001352387.1)
chlo 9  (predict for XP_004240374.1)
cyto 6,  nucl 1,  chlo 1,  cysk_nucl 1  (predict for XP_069154788.1)
cyto 4,  chlo 2,  nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_069154789.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001352387.1)
chlo 7  (predict for XP_004240374.1)
other 8  (predict for XP_069154788.1)
other 9  (predict for XP_069154789.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101257473
sly-r.6
for
101257473
sot-r.1
for
107062875
vvi-u.5
for
100852670
ppo-u.5
for
7468624
osa-u.5
for
107281139
osa-u.5
for
9269267
hvu-r.1
for
123445665


Ortholog ID: 14874
Species sly sot vvi ppo osa osa hvu
Symbol LOC101257473 LOC107062875 LOC100852670 LOC7468624 LOC107281139 LOC9269267 LOC123445665
Function* pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101257473 107062875 100852670 7468624 107281139 9269267 123445665
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