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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101258153   putative pentatricopeptide repeat-containing protein At1g13630 
 sly-r.6   101258153   putative pentatricopeptide repeat-containing protein At1g13630 
 ath-u.5   AT1G13630   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100256494   putative pentatricopeptide repeat-containing protein At1g13630 
 ppo-u.5   7482239   putative pentatricopeptide repeat-containing protein At1g13630 
 osa-u.5   4348913   putative pentatricopeptide repeat-containing protein At1g13630 

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Top 50 coexpressed genes to 101258153 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101258153 (sly-u.5 coexpression data)

CoexMap"101258153"


slyLOC101258153 | Entrez gene ID : 101258153    
Species sly ath vvi ppo osa hvu mtr sot tae nta bra cit gma zma ghi bdi bna sbi cre
Paralog 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_010320823.1 [sequence] [blastp]
XP_010320824.1 [sequence] [blastp]
XP_010320825.1 [sequence] [blastp]
XP_010320827.1 [sequence] [blastp]
XP_010320828.1 [sequence] [blastp]
XP_019069579.1 [sequence] [blastp]
XP_019069580.1 [sequence] [blastp]
XP_069153927.1 [sequence] [blastp]
XP_069153928.1 [sequence] [blastp]
XP_069153929.1 [sequence] [blastp]
XP_069153930.1 [sequence] [blastp]
XP_069153931.1 [sequence] [blastp]
XP_069153932.1 [sequence] [blastp]
XP_069153933.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_010320823.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_010320824.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_010320825.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_010320827.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_010320828.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_019069579.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_019069580.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_069153927.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_069153928.1)
mito 6,  cyto_mito 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_069153929.1)
cyto 6,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069153930.1)
cyto 6,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069153931.1)
cyto 6,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069153932.1)
cyto 6,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069153933.1)
Subcellular
localization
TargetP
mito 7,  chlo 4  (predict for XP_010320823.1)
mito 7,  chlo 4  (predict for XP_010320824.1)
mito 7,  chlo 4  (predict for XP_010320825.1)
mito 7,  chlo 4  (predict for XP_010320827.1)
mito 7,  chlo 4  (predict for XP_010320828.1)
mito 7,  chlo 4  (predict for XP_019069579.1)
mito 7,  chlo 4  (predict for XP_019069580.1)
mito 7,  chlo 4  (predict for XP_069153927.1)
mito 7,  chlo 4  (predict for XP_069153928.1)
mito 7,  chlo 4  (predict for XP_069153929.1)
other 8,  scret 7  (predict for XP_069153930.1)
other 8,  scret 7  (predict for XP_069153931.1)
other 8,  scret 7  (predict for XP_069153932.1)
other 8,  scret 7  (predict for XP_069153933.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101258153

.
sly-r.6
for
101258153

.
ath-u.5
for
AT1G13630

.
vvi-u.5
for
100256494

.
ppo-u.5
for
7482239

.
osa-u.5
for
4348913

.


Ortholog ID: 12245
Species ath sly osa bra vvi ppo tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G13630 LOC101258153 LOC4348913 LOC103848890 LOC100256494 LOC7482239 LOC123121430 LOC123181085 LOC123431222 LOC107887389 LOC107936434 LOC106346556 LOC106431580 LOC8067411 LOC102580185 LOC102628067 LOC100842666 LOC107802371 LOC107806853
Function* Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 putative pentatricopeptide repeat-containing protein At1g13630 uncharacterized LOC107802371 uncharacterized LOC107806853
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837924 101258153 4348913 103848890 100256494 7482239 123121430 123181085 123431222 107887389 107936434 106346556 106431580 8067411 102580185 102628067 100842666 107802371 107806853
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