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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101258770   pentatricopeptide repeat-containing protein 
 sly-r.6   101258770   pentatricopeptide repeat-containing protein 
 sot-r.1   102600742   pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like 
 nta-r.1   107794472   pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like 
 nta-r.1   107766653   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ath-u.5   AT4G04790   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT4G21880   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100787964   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 gma-u.5   100790259   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 bra-r.6   103859553   pentatricopeptide repeat-containing protein At4g21880, mitochondrial 
 bra-r.6   103839815   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 vvi-u.5   100250302   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ppo-u.5   7454408   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ppo-u.5   18095898   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 mtr-u.5   11446150   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 mtr-u.5   11410691   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ghi-r.1   107928609   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ghi-r.1   107916525   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 bna-r.1   106416180   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 bna-r.1   106366884   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 bna-r.1   106403870   pentatricopeptide repeat-containing protein At4g21880, mitochondrial-like 
 cit-r.1   102610475   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 osa-u.5   4328206   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 zma-u.5   103626578   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 tae-r.2   123132071   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 tae-r.2   123136097   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 tae-r.2   123143600   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 hvu-r.1   123401633   pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like 
 sbi-r.1   8069932   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 bdi-r.1   100830343   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 

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Top 50 coexpressed genes to 101258770 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101258770 (sly-u.5 coexpression data)

CoexMap"101258770"


slyLOC101258770 | Entrez gene ID : 101258770      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 2 2 2 1 2 2 2 3 1 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004244155.1 [sequence] [blastp]
XP_010324329.1 [sequence] [blastp]
XP_010324330.1 [sequence] [blastp]
XP_069143663.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  mito 1  (predict for XP_004244155.1)
chlo 7,  nucl 1,  mito 1,  cysk 1,  cyto_nucl 1,  nucl_plas 1  (predict for XP_010324329.1)
chlo 7,  nucl 1,  mito 1,  cysk 1,  cyto_nucl 1,  nucl_plas 1  (predict for XP_010324330.1)
chlo 6,  nucl 1,  mito 1  (predict for XP_069143663.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for XP_004244155.1)
chlo 7  (predict for XP_010324329.1)
chlo 7  (predict for XP_010324330.1)
chlo 7,  mito 3  (predict for XP_069143663.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101258770
sly-r.6
for
101258770
sot-r.1
for
102600742
nta-r.1
for
107794472
nta-r.1
for
107766653
ath-u.5
for
AT4G04790
ath-u.5
for
AT4G21880
gma-u.5
for
100787964
gma-u.5
for
100790259
bra-r.6
for
103859553
bra-r.6
for
103839815
vvi-u.5
for
100250302
ppo-u.5
for
7454408
ppo-u.5
for
18095898
mtr-u.5
for
11446150
mtr-u.5
for
11410691
ghi-r.1
for
107928609
ghi-r.1
for
107916525
bna-r.1
for
106416180
bna-r.1
for
106366884
bna-r.1
for
106403870
cit-r.1
for
102610475
osa-u.5
for
4328206
zma-u.5
for
103626578
tae-r.2
for
123132071
tae-r.2
for
123136097
tae-r.2
for
123143600
hvu-r.1
for
123401633
sbi-r.1
for
8069932
bdi-r.1
for
100830343


Ortholog ID: 5534
Species sly sot nta nta ath ath gma bra bra vvi ppo ppo mtr mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC101258770 LOC102600742 LOC107794472 LOC107766653 AT4G04790 AT4G21880 LOC100306302 LOC103859553 LOC103839815 LOC100250302 LOC7454408 LOC18095898 LOC11446150 LOC11410691 LOC107928609 LOC107916525 LOC106416180 LOC106403870 LOC106369170 LOC102610475 LOC4328206 LOC103626578 LOC123132071 LOC123136097 LOC123143600 LOC123401633 LOC8069932 LOC100830343
Function* pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like pentatricopeptide repeat-containing protein At4g04790, mitochondrial Tetratricopeptide repeat (TPR)-like superfamily protein Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g21880, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g21880, mitochondrial-like pentatricopeptide repeat-containing protein At4g21880, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 3
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr04120 Ubiquitin mediated proteolysis 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 4
mtr04145 Phagosome 3
mtr04517 IgSF CAM signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 9
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101258770 102600742 107794472 107766653 825816 828277 100306302 103859553 103839815 100250302 7454408 18095898 11446150 11410691 107928609 107916525 106416180 106403870 106369170 102610475 4328206 103626578 123132071 123136097 123143600 123401633 8069932 100830343
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