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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101259190   large ribosomal subunit protein bL34c 
 sly-r.6   101259190   large ribosomal subunit protein bL34c 
 sot-r.1   102588229   50S ribosomal protein L34, chloroplastic 
 nta-r.1   107775341   large ribosomal subunit protein bL34c 
 nta-r.1   107804469   large ribosomal subunit protein bL34c-like 
 ath-u.5   AT1G29070   Ribosomal protein L34 
 gma-u.5   100526907   50S ribosomal protein L34 
 gma-u.5   100500433   50S ribosomal protein L34 
 bra-r.6   103835300   50S ribosomal protein L34, chloroplastic 
 bra-r.6   103847913   50S ribosomal protein L34, chloroplastic 
 vvi-u.5   100258321   large ribosomal subunit protein bL34c 
 ppo-u.5   7455917   50S ribosomal protein L34, chloroplastic 
 mtr-u.5   11423417   50S ribosomal protein L34, chloroplastic 
 ghi-r.1   107905374   50S ribosomal protein L34, chloroplastic 
 ghi-r.1   121217742   50S ribosomal protein L34, chloroplastic 
 ghi-r.1   107962264   50S ribosomal protein L34, chloroplastic 
 bna-r.1   111204687   50S ribosomal protein L34, chloroplastic-like 
 bna-r.1   106358617   50S ribosomal protein L34, chloroplastic 
 bna-r.1   106359160   50S ribosomal protein L34, chloroplastic 
 cit-r.1   102617030   50S ribosomal protein L34, chloroplastic 
 osa-u.5   4327541   large ribosomal subunit protein bL34c 
 zma-u.5   100282969   50S ribosomal protein L34-like 
 tae-r.2   123062334   50S ribosomal protein L34, chloroplastic 
 tae-r.2   123079472   50S ribosomal protein L34, chloroplastic 
 tae-r.2   123071100   50S ribosomal protein L34, chloroplastic 
 hvu-r.1   123444633   50S ribosomal protein L34, chloroplastic 
 sbi-r.1   110434129   50S ribosomal protein L34, chloroplastic 
 bdi-r.1   100845574   50S ribosomal protein L34, chloroplastic 
 bdi-r.1   100840922   50S ribosomal protein L34, chloroplastic 
 cre-r.1   CHLRE_01g030050v5   uncharacterized protein 

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Top 50 coexpressed genes to 101259190 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101259190 (sly-u.5 coexpression data)

CoexMap"101259190"


slyLOC101259190 | Entrez gene ID : 101259190      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 2 1 1 1 3 3 1 1 1 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03010 [list] [network] Ribosome (6225 genes)
GO BP
GO:0006412 [list] [network] translation  (492 genes)  IEA  
GO CC
GO:0005762 [list] [network] mitochondrial large ribosomal subunit  (22 genes)  IEA  
GO:0005840 [list] [network] ribosome  (354 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (342 genes)  IEA  
Protein XP_004229053.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1  (predict for XP_004229053.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_004229053.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101259190
sly-r.6
for
101259190
sot-r.1
for
102588229
nta-r.1
for
107775341
nta-r.1
for
107804469
ath-u.5
for
AT1G29070
gma-u.5
for
100526907
gma-u.5
for
100500433
bra-r.6
for
103835300
bra-r.6
for
103847913
vvi-u.5
for
100258321
ppo-u.5
for
7455917
mtr-u.5
for
11423417
ghi-r.1
for
107905374
ghi-r.1
for
121217742
ghi-r.1
for
107962264
bna-r.1
for
111204687
bna-r.1
for
106358617
bna-r.1
for
106359160
cit-r.1
for
102617030
osa-u.5
for
4327541
zma-u.5
for
100282969
tae-r.2
for
123062334
tae-r.2
for
123079472
tae-r.2
for
123071100
hvu-r.1
for
123444633
sbi-r.1
for
110434129
bdi-r.1
for
100845574
bdi-r.1
for
100840922
cre-r.1
for
CHLRE_01g030050v5


Ortholog ID: 6722
Species sly sot nta nta ath gma gma bra bra vvi ppo mtr ghi ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC101259190 LOC102588229 LOC107775341 LOC107804469 AT1G29070 LOC100526907 LOC100500433 LOC103835300 LOC103847913 LOC100258321 LOC7455917 LOC11423417 LOC107905374 LOC107962264 LOC107901732 LOC111204687 LOC106358617 LOC106402165 LOC102617030 LOC4327541 LOC100282969 LOC123062334 LOC123079472 LOC123071100 LOC123444633 LOC110434129 LOC100845574 LOC100840922 CHLRE_01g030050v5
Function* large ribosomal subunit protein bL34c 50S ribosomal protein L34, chloroplastic large ribosomal subunit protein bL34c large ribosomal subunit protein bL34c-like Ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic large ribosomal subunit protein bL34c 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic-like 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic large ribosomal subunit protein bL34c 50S ribosomal protein L34-like 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic 50S ribosomal protein L34, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 15
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 14
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101259190 102588229 107775341 107804469 839781 100526907 100500433 103835300 103847913 100258321 7455917 11423417 107905374 107962264 107901732 111204687 106358617 106402165 102617030 4327541 100282969 123062334 123079472 123071100 123444633 110434129 100845574 100840922 5715359
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