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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101260161   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 sly-r.6   101260161   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 sly-u.5   101246403   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 sot-r.1   102603355   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic-like 
 sot-r.1   102605408   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like 
 nta-r.1   107809674   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 nta-r.1   107780626   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 nta-r.1   107772314   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like 
 ath-u.5   AT4G12060   Double Clp-N motif protein 
 ath-u.5   AT4G25370   Double Clp-N motif protein 
 gma-u.5   100802863   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 gma-u.5   100802336   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 gma-u.5   100786582   ATP-dependent Clp protease ATP-binding subunit-like 
 bra-r.6   103861553   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 bra-r.6   103839907   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 vvi-u.5   100261804   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 ppo-u.5   7490941   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 ppo-u.5   7482176   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 ppo-u.5   7476767   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 mtr-u.5   11439530   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 mtr-u.5   25497132   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 ghi-r.1   107920262   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 ghi-r.1   107892044   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 ghi-r.1   107888748   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 bna-r.1   106418624   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 bna-r.1   106440835   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 bna-r.1   111204564   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like 
 cit-r.1   102614445   ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic 
 cit-r.1   102623890   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 osa-u.5   4332243   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 zma-u.5   100281862   ATP-dependent Clp protease ATP-binding subunit clpA 
 zma-u.5   100274511   uncharacterized LOC100274511 
 tae-r.2   123092770   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 tae-r.2   123085272   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 tae-r.2   123098065   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 hvu-r.1   123449159   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like 
 sbi-r.1   8078852   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 
 bdi-r.1   100844920   ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 

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Top 50 coexpressed genes to 101260161 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101260161 (sly-u.5 coexpression data)

CoexMap"101260161"


slyLOC101260161 | Entrez gene ID : 101260161      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 3 2 1 3 2 3 3 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_004245696.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  extr 1  (predict for XP_004245696.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_004245696.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101260161
sly-r.6
for
101260161
sly-u.5
for
101246403
sot-r.1
for
102603355
sot-r.1
for
102605408
nta-r.1
for
107809674
nta-r.1
for
107780626
nta-r.1
for
107772314
ath-u.5
for
AT4G12060
ath-u.5
for
AT4G25370
gma-u.5
for
100802863
gma-u.5
for
100802336
gma-u.5
for
100786582
bra-r.6
for
103861553
bra-r.6
for
103839907
vvi-u.5
for
100261804
ppo-u.5
for
7490941
ppo-u.5
for
7482176
ppo-u.5
for
7476767
mtr-u.5
for
11439530
mtr-u.5
for
25497132
ghi-r.1
for
107920262
ghi-r.1
for
107892044
ghi-r.1
for
107888748
bna-r.1
for
106418624
bna-r.1
for
106440835
bna-r.1
for
111204564
cit-r.1
for
102614445
cit-r.1
for
102623890
osa-u.5
for
4332243
zma-u.5
for
100281862
zma-u.5
for
100274511
tae-r.2
for
123092770
tae-r.2
for
123085272
tae-r.2
for
123098065
hvu-r.1
for
123449159
sbi-r.1
for
8078852
bdi-r.1
for
100844920


Ortholog ID: 4588
Species sly sly sot sot nta nta nta ath ath gma gma gma bra bra vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna cit cit osa zma zma tae tae tae hvu sbi bdi
Symbol LOC101260161 LOC101246403 LOC102603355 LOC102605408 LOC107809674 LOC107780626 LOC107772314 AT4G12060 AT4G25370 LOC100802863 LOC100802336 LOC100786069 LOC103861553 LOC103839907 LOC100261804 LOC7490941 LOC7482176 LOC7476767 LOC11439530 LOC25497132 LOC107892044 LOC107888748 LOC107963657 LOC106418624 LOC106440835 LOC106367030 LOC102614445 LOC102623890 LOC4332243 LOC100281862 LOC100274511 LOC123092770 LOC123085272 LOC123098065 LOC123449159 LOC8078852 LOC100844920
Function* ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic-like ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like Double Clp-N motif protein Double Clp-N motif protein ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1-like ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic-like ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit clpA uncharacterized LOC100274511 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00860 Porphyrin metabolism 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi03018 RNA degradation 2
vvi00920 Sulfur metabolism 2
vvi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 6
ghi01240 Biosynthesis of cofactors 6
ghi00220 Arginine biosynthesis 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit01200 Carbon metabolism 3
cit01230 Biosynthesis of amino acids 3
cit00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae00561 Glycerolipid metabolism 2
tae00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101260161 101246403 102603355 102605408 107809674 107780626 107772314 826814 828640 100802863 100802336 100786069 103861553 103839907 100261804 7490941 7482176 7476767 11439530 25497132 107892044 107888748 107963657 106418624 106440835 106367030 102614445 102623890 4332243 100281862 100274511 123092770 123085272 123098065 123449159 8078852 100844920
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