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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263963   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like 
 sly-r.6   101263963   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like 
 sly-u.5   ribA   GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase 
 ath-u.5   RIBA2   riboflavin biosynthesis protein 
 ath-u.5   GCH   GTP cyclohydrolase II 
 gma-u.5   100795684   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 gma-u.5   100778763   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 gma-u.5   100782332   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 vvi-u.5   100248717   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 vvi-u.5   100241208   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 ppo-u.5   18107058   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 ppo-u.5   18095218   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 mtr-u.5   11418835   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 mtr-u.5   11426139   bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 osa-u.5   9270160   probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic 
 osa-u.5   4329733   probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic 
 zma-u.5   100383821   Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 
 zma-u.5   100304324   Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 

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Top 50 coexpressed genes to 101263963 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101263963 (sly-u.5 coexpression data)

CoexMap"101263963"


slyLOC101263963 | Entrez gene ID : 101263963      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 3 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00740 [list] [network] Riboflavin metabolism (20 genes)
sly00790 [list] [network] Folate biosynthesis (28 genes)
sly01240 [list] [network] Biosynthesis of cofactors (247 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (11 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO MF
GO:0003935 [list] [network] GTP cyclohydrolase II activity  (3 genes)  IEA  
GO:0008686 [list] [network] 3,4-dihydroxy-2-butanone-4-phosphate synthase activity  (3 genes)  IEA  
Protein XP_004250121.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_004250121.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_004250121.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263963

.
sly-r.6
for
101263963

.
sly-u.5
for
ribA

.
ath-u.5
for
RIBA2

.
ath-u.5
for
GCH

.
gma-u.5
for
100795684

.
gma-u.5
for
100778763

.
gma-u.5
for
100782332

.
vvi-u.5
for
100248717

.
vvi-u.5
for
100241208

.
ppo-u.5
for
18107058

.
ppo-u.5
for
18095218

.
mtr-u.5
for
11418835

.
mtr-u.5
for
11426139

.
osa-u.5
for
9270160

.
osa-u.5
for
4329733

.
zma-u.5
for
100383821

.
zma-u.5
for
100304324

.


Ortholog ID: 2701
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RIBA2 GCH LOC100778763 LOC100801046 LOC101263963 ribA LOC4329733 LOC9270160 LOC100383821 LOC100304324 LOC103873853 LOC103837523 LOC100241208 LOC100248717 LOC7466784 LOC11426139 LOC11418835 LOC123165711 LOC123127569 LOC123408293 LOC123401666 LOC107908940 LOC121221463 LOC106426651 LOC106348065 CHLRE_14g620350v5 LOC8055385 LOC8072615 LOC102600595 LOC102585508 LOC102626341 LOC102621261 LOC100832262 LOC100844595 LOC107789601 LOC107809151
Function* riboflavin biosynthesis protein GTP cyclohydrolase II bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic uncharacterized protein probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma04626 Plant-pathogen interaction 5
gma00740 Riboflavin metabolism 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03060 Protein export 2
sly00620 Pyruvate metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 5
osa04626 Plant-pathogen interaction 3
osa01240 Biosynthesis of cofactors 2
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00350 Tyrosine metabolism 2
osa00360 Phenylalanine metabolism 2
osa00950 Isoquinoline alkaloid biosynthesis 2
osa04075 Plant hormone signal transduction 2
osa00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
zma04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00051 Fructose and mannose metabolism 3
bra00270 Cysteine and methionine metabolism 3
bra00480 Glutathione metabolism 3
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04626 Plant-pathogen interaction 3
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 5
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo01200 Carbon metabolism 2
ppo03010 Ribosome 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 4
mtr01240 Biosynthesis of cofactors 4
mtr00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 5
mtr01240 Biosynthesis of cofactors 5
mtr00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 3
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae01232 Nucleotide metabolism 3
tae04075 Plant hormone signal transduction 3
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 4
hvu00860 Porphyrin metabolism 2
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu02010 ABC transporters 2
hvu04075 Plant hormone signal transduction 2
hvu00220 Arginine biosynthesis 2
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 4
ghi00790 Folate biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 4
ghi00790 Folate biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 6
bna00740 Riboflavin metabolism 4
bna00790 Folate biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 6
bna00740 Riboflavin metabolism 4
bna00790 Folate biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
cre00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 4
sbi04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot00630 Glyoxylate and dicarboxylate metabolism 2
sot01240 Biosynthesis of cofactors 2
sot04626 Plant-pathogen interaction 2
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 3
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 5
bdi00790 Folate biosynthesis 3
bdi01200 Carbon metabolism 3
bdi00740 Riboflavin metabolism 2
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04626 Plant-pathogen interaction 4
nta01240 Biosynthesis of cofactors 3
nta04130 SNARE interactions in vesicular transport 3
nta00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta01230 Biosynthesis of amino acids 3
nta00450 Selenocompound metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816777 836551 100778763 100801046 101263963 544238 4329733 9270160 100383821 100304324 103873853 103837523 100241208 100248717 7466784 11426139 11418835 123165711 123127569 123408293 123401666 107908940 121221463 106426651 106348065 5715886 8055385 8072615 102600595 102585508 102626341 102621261 100832262 100844595 107789601 107809151
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