ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101265086	probable mediator of RNA polymerase II transcription subunit 26c
sly-r.6	101265086	probable mediator of RNA polymerase II transcription subunit 26c
sly-m.5	101265086	probable mediator of RNA polymerase II transcription subunit 26c
sot-r.1	102595451	probable mediator of RNA polymerase II transcription subunit 26c
nta-r.1	107787122	putative mediator of RNA polymerase II transcription subunit 26c
nta-r.1	107776552	putative mediator of RNA polymerase II transcription subunit 26c
ath-u.5	AT5G09850	Transcription elongation factor (TFIIS) family protein
gma-u.5	100790582	probable mediator of RNA polymerase II transcription subunit 26c
gma-u.5	100796457	probable mediator of RNA polymerase II transcription subunit 26c
gma-u.5	100804034	probable mediator of RNA polymerase II transcription subunit 26c
bra-r.6	103846857	probable mediator of RNA polymerase II transcription subunit 26c
bra-r.6	103855837	probable mediator of RNA polymerase II transcription subunit 26c
vvi-u.5	100262291	probable mediator of RNA polymerase II transcription subunit 26c
vvi-u.5	100260896	probable mediator of RNA polymerase II transcription subunit 26c
ppo-u.5	18108014	probable mediator of RNA polymerase II transcription subunit 26c
ppo-u.5	7492034	probable mediator of RNA polymerase II transcription subunit 26c
mtr-u.5	11424973	probable mediator of RNA polymerase II transcription subunit 26c
ghi-r.1	107904423	probable mediator of RNA polymerase II transcription subunit 26c
ghi-r.1	107962355	probable mediator of RNA polymerase II transcription subunit 26c
ghi-r.1	107939257	probable mediator of RNA polymerase II transcription subunit 26c
bna-r.1	106430557	probable mediator of RNA polymerase II transcription subunit 26c
bna-r.1	106419338	probable mediator of RNA polymerase II transcription subunit 26c
bna-r.1	106384922	probable mediator of RNA polymerase II transcription subunit 26c
cit-r.1	102616708	probable mediator of RNA polymerase II transcription subunit 26c
osa-u.5	4351596	probable mediator of RNA polymerase II transcription subunit 26c
osa-u.5	4349871	probable mediator of RNA polymerase II transcription subunit 26c
zma-u.5	100276791	uncharacterized LOC100276791
zma-u.5	100275944	uncharacterized LOC100275944
tae-r.2	123120093	probable mediator of RNA polymerase II transcription subunit 26c
tae-r.2	123111098	probable mediator of RNA polymerase II transcription subunit 26c
tae-r.2	123102936	probable mediator of RNA polymerase II transcription subunit 26c
hvu-r.1	123395540	probable mediator of RNA polymerase II transcription subunit 26c
sbi-r.1	8073607	probable mediator of RNA polymerase II transcription subunit 26c
sbi-r.1	8073487	probable mediator of RNA polymerase II transcription subunit 26c
bdi-r.1	100832597	probable mediator of RNA polymerase II transcription subunit 26c
cre-r.1	CHLRE_06g292650v5	uncharacterized protein

Top 50 coexpressed genes to 101265086 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101265086 (sly-u.5 coexpression data)

CoexMap"101265086"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

Protein

XP_004249876.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_004249876.1)

Subcellular
localization
TargetP

other 6, scret 4

(predict for XP_004249876.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101265086	sly-r.6 for 101265086	sly-m.5 for 101265086	sot-r.1 for 102595451	nta-r.1 for 107787122	nta-r.1 for 107776552	ath-u.5 for AT5G09850	gma-u.5 for 100790582	gma-u.5 for 100796457	gma-u.5 for 100804034	bra-r.6 for 103846857	bra-r.6 for 103855837	vvi-u.5 for 100262291	vvi-u.5 for 100260896	ppo-u.5 for 18108014	ppo-u.5 for 7492034	mtr-u.5 for 11424973	ghi-r.1 for 107904423	ghi-r.1 for 107962355	ghi-r.1 for 107939257	bna-r.1 for 106430557	bna-r.1 for 106419338	bna-r.1 for 106384922	cit-r.1 for 102616708	osa-u.5 for 4351596	osa-u.5 for 4349871	zma-u.5 for 100276791	zma-u.5 for 100275944	tae-r.2 for 123120093	tae-r.2 for 123111098	tae-r.2 for 123102936	hvu-r.1 for 123395540	sbi-r.1 for 8073607	sbi-r.1 for 8073487	bdi-r.1 for 100832597	cre-r.1 for CHLRE_06g292650v5

Ortholog

Ortholog ID: 4780

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

probable mediator of RNA polymerase II transcription subunit 26c

putative mediator of RNA polymerase II transcription subunit 26c

Transcription elongation factor (TFIIS) family protein

probable mediator of RNA polymerase II transcription subunit 26c

uncharacterized LOC100276791

uncharacterized LOC100275944

probable mediator of RNA polymerase II transcription subunit 26c

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	3
nta04141	Protein processing in endoplasmic reticulum	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	3
nta04141	Protein processing in endoplasmic reticulum	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	6
gma03082	ATP-dependent chromatin remodeling	4
gma04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma04075	Plant hormone signal transduction	2
gma03040	Spliceosome	2
gma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03250	Viral life cycle - HIV-1	2
ppo03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3
ghi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01250	Biosynthesis of nucleotide sugars	2
ghi00600	Sphingolipid metabolism	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00564	Glycerophospholipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	3
zma03083	Polycomb repressive complex	2
zma03410	Base excision repair	2
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi00010	Glycolysis / Gluconeogenesis	2
sbi00052	Galactose metabolism	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2
bdi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

101265086

102595451

107787122

107776552

830845

100790582

100796457

100804034

103846857

103855837

100262291

100260896

18108014

7492034

11424973

107904423

107939257

107928114

106384922

106430536

106426691

102616708

4351596

4349871

100276791

100275944

123120093

123111098

123102936

123395540

8073607

8073487

100832597

5727149

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	2	1	3	2	2	2	1	3	3	1	2	2	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101265086 (sly-u.5 coexpression data)

Top 50 enrichment test to 101265086 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**