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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g292650v5   uncharacterized protein 
 ath-u.5   AT5G09850   Transcription elongation factor (TFIIS) family protein 
 gma-u.5   100796457   probable mediator of RNA polymerase II transcription subunit 26c 
 gma-u.5   100804034   probable mediator of RNA polymerase II transcription subunit 26c 
 gma-u.5   100820221   probable mediator of RNA polymerase II transcription subunit 26c 
 sly-u.5   101265086   probable mediator of RNA polymerase II transcription subunit 26c 
 osa-u.5   4351596   probable mediator of RNA polymerase II transcription subunit 26c 
 osa-u.5   4349871   probable mediator of RNA polymerase II transcription subunit 26c 
 zma-u.5   100275944   uncharacterized LOC100275944 
 zma-u.5   100276791   uncharacterized LOC100276791 
 vvi-u.5   100262291   probable mediator of RNA polymerase II transcription subunit 26c 
 vvi-u.5   100260896   probable mediator of RNA polymerase II transcription subunit 26c 
 ppo-u.5   18108014   probable mediator of RNA polymerase II transcription subunit 26c 
 ppo-u.5   7492034   probable mediator of RNA polymerase II transcription subunit 26c 
 mtr-u.5   11424973   probable mediator of RNA polymerase II transcription subunit 26c 

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Top 50 coexpressed genes to CHLRE_06g292650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g292650v5 (cre-r.1 coexpression data)

CoexMap"5727149"


creCHLRE_06g292650v5 | Entrez gene ID : 5727149      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0046872 [list] [network] metal ion binding  (704 genes)  IEA  
Protein XP_042924155.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_042924155.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_042924155.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g292650v5

.
ath-u.5
for
AT5G09850

.
gma-u.5
for
100796457

.
gma-u.5
for
100804034

.
gma-u.5
for
100820221

.
sly-u.5
for
101265086

.
osa-u.5
for
4351596

.
osa-u.5
for
4349871

.
zma-u.5
for
100275944

.
zma-u.5
for
100276791

.
vvi-u.5
for
100262291

.
vvi-u.5
for
100260896

.
ppo-u.5
for
18108014

.
ppo-u.5
for
7492034

.
mtr-u.5
for
11424973

.


Ortholog ID: 4780
Species ath gma gma sly osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT5G09850 LOC100796457 LOC100790582 LOC101265086 LOC4351596 LOC100276791 LOC100275944 LOC103846857 LOC103855837 LOC100260896 LOC100262291 LOC18108014 LOC7492034 LOC11424973 LOC123111098 LOC123102936 LOC123395540 LOC107928114 LOC107904423 LOC106384922 LOC106426691 CHLRE_06g292650v5 LOC8073487 LOC8073607 LOC102595451 LOC102616708 LOC100832597 LOC107776552 LOC107787122
Function* Transcription elongation factor (TFIIS) family protein probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c uncharacterized LOC100276791 uncharacterized LOC100275944 probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c uncharacterized protein probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c probable mediator of RNA polymerase II transcription subunit 26c putative mediator of RNA polymerase II transcription subunit 26c putative mediator of RNA polymerase II transcription subunit 26c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
gma03082 ATP-dependent chromatin remodeling 4
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 3
zma03083 Polycomb repressive complex 2
zma03410 Base excision repair 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00052 Galactose metabolism 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 3
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 3
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830845 100796457 100790582 101265086 4351596 100276791 100275944 103846857 103855837 100260896 100262291 18108014 7492034 11424973 123111098 123102936 123395540 107928114 107904423 106384922 106426691 5727149 8073487 8073607 102595451 102616708 100832597 107776552 107787122
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