ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101265553	ubiquitin C-terminal hydrolase 13-like
sly-r.6	101265553	ubiquitin C-terminal hydrolase 13-like
sly-u.5	101266987	ubiquitin C-terminal hydrolase 12
sly-u.5	101255649	ubiquitin C-terminal hydrolase 12
sly-u.5	101257631	ubiquitin C-terminal hydrolase 13-like
sot-r.1	102602101	ubiquitin carboxyl-terminal hydrolase 13-like
sot-r.1	102598288	ubiquitin carboxyl-terminal hydrolase 12-like
sot-r.1	102596058	ubiquitin carboxyl-terminal hydrolase 13-like
nta-r.1	107760390	ubiquitin C-terminal hydrolase 12
nta-r.1	107760236	ubiquitin C-terminal hydrolase 12
nta-r.1	107830540	ubiquitin C-terminal hydrolase 12-like
ath-u.5	UBP13	ubiquitin-specific protease 13
ath-u.5	UBP12	ubiquitin-specific protease 12
gma-u.5	100781560	ubiquitin C-terminal hydrolase 13
gma-u.5	100337655	ubiquitin specific protease 12
gma-u.5	100337654	ubiquitin specific protease 12
bra-r.6	103859415	ubiquitin carboxyl-terminal hydrolase 13
bra-r.6	103870300	ubiquitin carboxyl-terminal hydrolase 13
bra-r.6	103855679	ubiquitin carboxyl-terminal hydrolase 12
vvi-u.5	100266796	ubiquitin C-terminal hydrolase 12
vvi-u.5	100252573	ubiquitin C-terminal hydrolase 12
vvi-u.5	100244518	ubiquitin C-terminal hydrolase 12
ppo-u.5	7469919	ubiquitin C-terminal hydrolase 12
ppo-u.5	7491593	ubiquitin C-terminal hydrolase 12
ppo-u.5	7486860	ubiquitin C-terminal hydrolase 12
mtr-u.5	11418867	ubiquitin carboxyl-terminal hydrolase 12
mtr-u.5	11432874	ubiquitin carboxyl-terminal hydrolase 13
mtr-u.5	11443023	ubiquitin carboxyl-terminal hydrolase 13
ghi-r.1	107906657	ubiquitin C-terminal hydrolase 13
ghi-r.1	107925641	ubiquitin C-terminal hydrolase 12
ghi-r.1	107941977	ubiquitin C-terminal hydrolase 13
bna-r.1	125581490	ubiquitin C-terminal hydrolase 12-like
bna-r.1	106375472	ubiquitin C-terminal hydrolase 12-like
bna-r.1	106351307	ubiquitin C-terminal hydrolase 13-like
cit-r.1	102619605	ubiquitin C-terminal hydrolase 12
cit-r.1	102619247	ubiquitin C-terminal hydrolase 13-like
osa-u.5	4342469	ubiquitin C-terminal hydrolase 12
osa-u.5	4324616	ubiquitin C-terminal hydrolase 13
osa-u.5	4352242	ubiquitin C-terminal hydrolase 12
zma-u.5	100383306	ubiquitin carboxyl-terminal hydrolase 12
zma-u.5	100383827	Ubiquitin carboxyl-terminal hydrolase 13
zma-u.5	100194235	uncharacterized LOC100194235
tae-r.2	123062197	ubiquitin C-terminal hydrolase 13
tae-r.2	123052820	ubiquitin C-terminal hydrolase 12
tae-r.2	123044942	ubiquitin C-terminal hydrolase 12
hvu-r.1	123448450	ubiquitin C-terminal hydrolase 12-like
hvu-r.1	123444525	ubiquitin C-terminal hydrolase 13-like
hvu-r.1	123426209	ubiquitin C-terminal hydrolase 12-like
sbi-r.1	8071953	ubiquitin carboxyl-terminal hydrolase 12
sbi-r.1	8063275	ubiquitin carboxyl-terminal hydrolase 12
sbi-r.1	8079273	ubiquitin carboxyl-terminal hydrolase 13
bdi-r.1	100832490	ubiquitin carboxyl-terminal hydrolase 12
bdi-r.1	100834129	ubiquitin carboxyl-terminal hydrolase 12
bdi-r.1	100843772	ubiquitin carboxyl-terminal hydrolase 13
cre-r.1	CHLRE_07g336200v5	uncharacterized protein

Top 50 coexpressed genes to 101265553 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101265553 (sly-u.5 coexpression data)

CoexMap"101265553"

[Cytoscape]

Annotation

functional annotation

KEGG

sly03083 [list] [network] Polycomb repressive complex (60 genes)

GO BP

GO:0031647 [list] [network] regulation of protein stability	(21 genes)	IEA
GO:0016579 [list] [network] protein deubiquitination	(67 genes)	IEA

GO CC

GO:0005829 [list] [network] cytosol	(916 genes)	IEA
GO:0005634 [list] [network] nucleus	(2947 genes)	IEA

GO MF

GO:0004843 [list] [network] cysteine-type deubiquitinase activity	(55 genes)	IEA
GO:0005515 [list] [network] protein binding	(3982 genes)	IEA

Protein

XP_010322453.1 [sequence] [blastp]
XP_019069704.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 4, vacu 1, pero 1	(predict for XP_010322453.1)
cyto 5, nucl 4	(predict for XP_019069704.1)

Subcellular
localization
TargetP

other 8	(predict for XP_010322453.1)
other 8	(predict for XP_019069704.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101265553	sly-r.6 for 101265553	sly-u.5 for 101266987	sly-u.5 for 101255649	sly-u.5 for 101257631	sot-r.1 for 102602101	sot-r.1 for 102598288	sot-r.1 for 102596058	nta-r.1 for 107760390	nta-r.1 for 107760236	nta-r.1 for 107830540	ath-u.5 for UBP13	ath-u.5 for UBP12	gma-u.5 for 100781560	gma-u.5 for 100337655	gma-u.5 for 100337654	bra-r.6 for 103859415	bra-r.6 for 103870300	bra-r.6 for 103855679	vvi-u.5 for 100266796	vvi-u.5 for 100252573	vvi-u.5 for 100244518	ppo-u.5 for 7469919	ppo-u.5 for 7491593	ppo-u.5 for 7486860	mtr-u.5 for 11418867	mtr-u.5 for 11432874	mtr-u.5 for 11443023	ghi-r.1 for 107906657	ghi-r.1 for 107925641	ghi-r.1 for 107941977	bna-r.1 for 125581490	bna-r.1 for 106375472	bna-r.1 for 106351307	cit-r.1 for 102619605	cit-r.1 for 102619247	osa-u.5 for 4342469	osa-u.5 for 4324616	osa-u.5 for 4352242	zma-u.5 for 100383306	zma-u.5 for 100383827	zma-u.5 for 100194235	tae-r.2 for 123062197	tae-r.2 for 123052820	tae-r.2 for 123044942	hvu-r.1 for 123448450	hvu-r.1 for 123444525	hvu-r.1 for 123426209	sbi-r.1 for 8071953	sbi-r.1 for 8063275	sbi-r.1 for 8079273	bdi-r.1 for 100832490	bdi-r.1 for 100834129	bdi-r.1 for 100843772	cre-r.1 for CHLRE_07g336200v5

Ortholog

Ortholog ID: 900

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

UBP13

UBP12

Function^*

ubiquitin C-terminal hydrolase 13-like