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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   ASS   argininosuccinate synthase 
 sly-r.6   ASS   argininosuccinate synthase 
 sot-r.1   102596102   argininosuccinate synthase, chloroplastic 
 nta-r.1   107784999   argininosuccinate synthase, chloroplastic 
 nta-r.1   107780821   argininosuccinate synthase, chloroplastic-like 
 ath-u.5   AT4G24830   arginosuccinate synthase family 
 gma-u.5   100816038   argininosuccinate synthase, chloroplastic 
 gma-u.5   100797468   argininosuccinate synthase, chloroplastic 
 gma-u.5   100795886   argininosuccinate synthase, chloroplastic-like 
 bra-r.6   103862653   argininosuccinate synthase, chloroplastic 
 bra-r.6   103861509   argininosuccinate synthase, chloroplastic 
 vvi-u.5   100266261   argininosuccinate synthase, chloroplastic 
 ppo-u.5   7491622   argininosuccinate synthase, chloroplastic 
 ppo-u.5   7490894   argininosuccinate synthase, chloroplastic 
 mtr-u.5   11426372   argininosuccinate synthase, chloroplastic 
 mtr-u.5   11419138   argininosuccinate synthase, chloroplastic 
 mtr-u.5   11414012   argininosuccinate synthase, chloroplastic 
 ghi-r.1   107949646   argininosuccinate synthase, chloroplastic 
 ghi-r.1   107941042   argininosuccinate synthase, chloroplastic 
 bna-r.1   106442369   argininosuccinate synthase, chloroplastic-like 
 bna-r.1   106440771   argininosuccinate synthase, chloroplastic-like 
 bna-r.1   106410331   argininosuccinate synthase, chloroplastic 
 cit-r.1   102630538   argininosuccinate synthase, chloroplastic 
 osa-u.5   4351847   argininosuccinate synthase, chloroplastic 
 zma-u.5   100274106   argininosuccinate synthase 
 tae-r.2   123131536   argininosuccinate synthase, chloroplastic 
 tae-r.2   123054635   argininosuccinate synthase, chloroplastic 
 tae-r.2   123181902   argininosuccinate synthase, chloroplastic 
 hvu-r.1   123442236   argininosuccinate synthase, chloroplastic 
 sbi-r.1   8086129   argininosuccinate synthase, chloroplastic 
 bdi-r.1   100833059   argininosuccinate synthase, chloroplastic 
 bdi-r.1   100844015   argininosuccinate synthase, chloroplastic 
 cre-r.1   CHLRE_09g416050v5   uncharacterized protein 

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Top 50 coexpressed genes to ASS (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ASS (sly-u.5 coexpression data)

CoexMap"101267891"


slyASS | Entrez gene ID : 101267891      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 3 2 1 2 3 2 3 1 1 1 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00220 [list] [network] Arginine biosynthesis (41 genes)
sly00250 [list] [network] Alanine, aspartate and glutamate metabolism (54 genes)
sly01230 [list] [network] Biosynthesis of amino acids (226 genes)
GO BP
GO:0000050 [list] [network] urea cycle  (1 genes)  IEA  
GO:0000053 [list] [network] argininosuccinate metabolic process  (1 genes)  IEA  
GO:0006526 [list] [network] L-arginine biosynthetic process  (10 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004055 [list] [network] argininosuccinate synthase activity  (1 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein NP_001316344.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  plas 1,  pero 1  (predict for NP_001316344.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001316344.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
ASS
sly-r.6
for
ASS
sot-r.1
for
102596102
nta-r.1
for
107784999
nta-r.1
for
107780821
ath-u.5
for
AT4G24830
gma-u.5
for
100816038
gma-u.5
for
100797468
gma-u.5
for
100795886
bra-r.6
for
103862653
bra-r.6
for
103861509
vvi-u.5
for
100266261
ppo-u.5
for
7491622
ppo-u.5
for
7490894
mtr-u.5
for
11426372
mtr-u.5
for
11419138
mtr-u.5
for
11414012
ghi-r.1
for
107949646
ghi-r.1
for
107941042
bna-r.1
for
106442369
bna-r.1
for
106440771
bna-r.1
for
106410331
cit-r.1
for
102630538
osa-u.5
for
4351847
zma-u.5
for
100274106
tae-r.2
for
123131536
tae-r.2
for
123054635
tae-r.2
for
123181902
hvu-r.1
for
123442236
sbi-r.1
for
8086129
bdi-r.1
for
100833059
bdi-r.1
for
100844015
cre-r.1
for
CHLRE_09g416050v5


Ortholog ID: 6317
Species sly sot nta nta ath gma gma gma bra bra vvi ppo ppo mtr mtr mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi bdi cre
Symbol ASS LOC102596102 LOC107784999 LOC107780821 AT4G24830 LOC100816038 LOC100797468 LOC100499845 LOC103862653 LOC103861509 LOC100266261 LOC7491622 LOC7490894 LOC11426372 LOC11419138 LOC11414012 LOC107949646 LOC107941042 LOC106440771 LOC106410331 LOC106375795 LOC102630538 LOC4351847 LOC100274106 LOC123131536 LOC123054635 LOC123181902 LOC123442236 LOC8086129 LOC100833059 LOC100844015 CHLRE_09g416050v5
Function* argininosuccinate synthase argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic-like arginosuccinate synthase family argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic-like argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic argininosuccinate synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00620 Pyruvate metabolism 7
sly01200 Carbon metabolism 7
sly00061 Fatty acid biosynthesis 7
sly01212 Fatty acid metabolism 7
sly00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta03013 Nucleocytoplasmic transport 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 10
ath01210 2-Oxocarboxylic acid metabolism 7
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath03010 Ribosome 4
ath00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00970 Aminoacyl-tRNA biosynthesis 2
gma04146 Peroxisome 2
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 5
gma00220 Arginine biosynthesis 2
gma01200 Carbon metabolism 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 5
gma00220 Arginine biosynthesis 3
gma00190 Oxidative phosphorylation 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi01230 Biosynthesis of amino acids 3
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03015 mRNA surveillance pathway 4
ppo03018 RNA degradation 4
ppo01230 Biosynthesis of amino acids 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr01230 Biosynthesis of amino acids 3
mtr00220 Arginine biosynthesis 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr01230 Biosynthesis of amino acids 3
mtr00220 Arginine biosynthesis 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa00190 Oxidative phosphorylation 5
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00220 Arginine biosynthesis 3
osa00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00220 Arginine biosynthesis 8
tae01210 2-Oxocarboxylic acid metabolism 4
tae00250 Alanine, aspartate and glutamate metabolism 4
tae00340 Histidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00220 Arginine biosynthesis 6
tae00340 Histidine metabolism 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00220 Arginine biosynthesis 4
tae00500 Starch and sucrose metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 9
hvu00220 Arginine biosynthesis 3
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01200 Carbon metabolism 3
hvu01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 3
sbi03010 Ribosome 3
sbi03013 Nucleocytoplasmic transport 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 7
bdi00300 Lysine biosynthesis 4
bdi00220 Arginine biosynthesis 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 9
bdi03010 Ribosome 5
bdi00300 Lysine biosynthesis 5
bdi00220 Arginine biosynthesis 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 10
cre01230 Biosynthesis of amino acids 9
cre00250 Alanine, aspartate and glutamate metabolism 6
cre01210 2-Oxocarboxylic acid metabolism 4
cre00620 Pyruvate metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101267891 102596102 107784999 107780821 828586 100816038 100797468 100499845 103862653 103861509 100266261 7491622 7490894 11426372 11419138 11414012 107949646 107941042 106440771 106410331 106375795 102630538 4351847 100274106 123131536 123054635 123181902 123442236 8086129 100833059 100844015 5722377
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