ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102578475	uncharacterized protein ycf45
sot-r.1	102599671	uncharacterized protein ycf45
sot-r.1	102605144	uncharacterized protein ycf45
sly-u.5	101252870	uncharacterized protein ycf45
sly-u.5	101257931	protein SEEDLING PLASTID DEVELOPMENT 1
sly-u.5	101265790	P-loop containing nucleoside triphosphate hydrolases superfamily protein
nta-r.1	107823234	protein SEEDLING PLASTID DEVELOPMENT 1
nta-r.1	107804663	protein SEEDLING PLASTID DEVELOPMENT 1
nta-r.1	107770606	protein SEEDLING PLASTID DEVELOPMENT 1-like
ath-u.5	SPD1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT1G33290	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT1G73170	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100786624	protein SEEDLING PLASTID DEVELOPMENT 1
gma-u.5	100807394	protein SEEDLING PLASTID DEVELOPMENT 1
gma-u.5	100810052	protein SEEDLING PLASTID DEVELOPMENT 1
bra-r.6	103870466	uncharacterized protein ycf45
bra-r.6	103852828	uncharacterized protein ycf45
bra-r.6	103840080	uncharacterized protein ycf45
vvi-u.5	100256808	hypothetical protein
vvi-u.5	100254713	protein SEEDLING PLASTID DEVELOPMENT 1
vvi-u.5	100243620	protein SEEDLING PLASTID DEVELOPMENT 1
ppo-u.5	7459104	protein SEEDLING PLASTID DEVELOPMENT 1
ppo-u.5	7468442	protein SEEDLING PLASTID DEVELOPMENT 1
mtr-u.5	25485535	protein SEEDLING PLASTID DEVELOPMENT 1
mtr-u.5	25484494	uncharacterized protein ycf45
mtr-u.5	25502519	protein SEEDLING PLASTID DEVELOPMENT 1
ghi-r.1	107939273	protein SEEDLING PLASTID DEVELOPMENT 1
ghi-r.1	107918228	protein SEEDLING PLASTID DEVELOPMENT 1
ghi-r.1	107916820	protein SEEDLING PLASTID DEVELOPMENT 1
bna-r.1	106399503	protein SEEDLING PLASTID DEVELOPMENT 1-like
bna-r.1	106452679	protein SEEDLING PLASTID DEVELOPMENT 1
bna-r.1	106421076	uncharacterized protein ycf45
cit-r.1	102614364	protein SEEDLING PLASTID DEVELOPMENT 1
cit-r.1	102608045	uncharacterized protein ycf45
cit-r.1	102618446	protein SEEDLING PLASTID DEVELOPMENT 1
osa-u.5	4351767	uncharacterized protein ycf45
osa-u.5	4342600	protein SEEDLING PLASTID DEVELOPMENT 1
osa-u.5	4340177	protein SEEDLING PLASTID DEVELOPMENT 1
zma-u.5	100501605	uncharacterized LOC100501605
zma-u.5	100277737	uncharacterized LOC100277737
zma-u.5	100274315	P-loop containing nucleoside triphosphate hydrolase superfamily protein
tae-r.2	123159921	protein SEEDLING PLASTID DEVELOPMENT 1
tae-r.2	123119955	uncharacterized protein ycf45
tae-r.2	123102916	uncharacterized protein ycf45
hvu-r.1	123410009	protein SEEDLING PLASTID DEVELOPMENT 1
hvu-r.1	123410861	protein SEEDLING PLASTID DEVELOPMENT 1
hvu-r.1	123452363	uncharacterized protein ycf45
sbi-r.1	8082824	uncharacterized protein ycf45
sbi-r.1	8075042	uncharacterized protein ycf45
sbi-r.1	8069170	uncharacterized protein ycf45
bdi-r.1	100835165	uncharacterized protein ycf45
bdi-r.1	100833866	uncharacterized protein ycf45
bdi-r.1	104581645	uncharacterized LOC104581645
cre-r.1	CHLRE_17g716050v5	uncharacterized protein
cre-r.1	CHLRE_16g676850v5	uncharacterized protein
cre-r.1	CHLRE_12g496150v5	uncharacterized protein

Top 50 coexpressed genes to 102578475 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102578475 (sot-r.1 coexpression data)

CoexMap"102578475"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(606 genes)

IEA

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity

(431 genes)

IEA

Protein

XP_006358952.1 [sequence] [blastp]
XP_015169672.1 [sequence] [blastp]
XP_015169673.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9	(predict for XP_006358952.1)
chlo 7, extr 1, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_015169672.1)
chlo 7, extr 1, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_015169673.1)

Subcellular
localization
TargetP

chlo 8	(predict for XP_006358952.1)
other 8	(predict for XP_015169672.1)
other 8	(predict for XP_015169673.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102578475	sot-r.1 for 102599671	sot-r.1 for 102605144	sly-u.5 for 101252870	sly-u.5 for 101257931	sly-u.5 for 101265790	nta-r.1 for 107823234	nta-r.1 for 107804663	nta-r.1 for 107770606	ath-u.5 for SPD1	ath-u.5 for AT1G33290	ath-u.5 for AT1G73170	gma-u.5 for 100786624	gma-u.5 for 100807394	gma-u.5 for 100810052	bra-r.6 for 103870466	bra-r.6 for 103852828	bra-r.6 for 103840080	vvi-u.5 for 100256808	vvi-u.5 for 100254713	vvi-u.5 for 100243620	ppo-u.5 for 7459104	ppo-u.5 for 7468442	mtr-u.5 for 25485535	mtr-u.5 for 25484494	mtr-u.5 for 25502519	ghi-r.1 for 107939273	ghi-r.1 for 107918228	ghi-r.1 for 107916820	bna-r.1 for 106399503	bna-r.1 for 106452679	bna-r.1 for 106421076	cit-r.1 for 102614364	cit-r.1 for 102608045	cit-r.1 for 102618446	osa-u.5 for 4351767	osa-u.5 for 4342600	osa-u.5 for 4340177	zma-u.5 for 100501605	zma-u.5 for 100277737	zma-u.5 for 100274315	tae-r.2 for 123159921	tae-r.2 for 123119955	tae-r.2 for 123102916	hvu-r.1 for 123410009	hvu-r.1 for 123410861	hvu-r.1 for 123452363	sbi-r.1 for 8082824	sbi-r.1 for 8075042	sbi-r.1 for 8069170	bdi-r.1 for 100835165	bdi-r.1 for 100833866	bdi-r.1 for 104581645	cre-r.1 for CHLRE_17g716050v5	cre-r.1 for CHLRE_16g676850v5	cre-r.1 for CHLRE_12g496150v5

Ortholog

Ortholog ID: 1855

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SPD1

Function^*

uncharacterized protein ycf45