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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102580335   ribosome biogenesis protein WDR12 homolog 
 sot-r.1   102587196   ribosome biogenesis protein WDR12 homolog 
 sly-u.5   101261678   ribosome biogenesis protein WDR12 homolog 
 nta-r.1   107787040   ribosome biogenesis protein WDR12 homolog 
 nta-r.1   107809177   ribosome biogenesis protein WDR12 homolog 
 ath-u.5   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100819142   ribosome biogenesis protein WDR12 homolog 
 gma-u.5   100818682   ribosome biogenesis protein WDR12 homolog 
 gma-u.5   100811859   ribosome biogenesis protein WDR12 homolog 
 bra-r.6   103856143   ribosome biogenesis protein WDR12 homolog 
 bra-r.6   103850990   ribosome biogenesis protein WDR12 homolog 
 bra-r.6   103846403   ribosome biogenesis protein WDR12 homolog 
 vvi-u.5   100265290   ribosome biogenesis protein WDR12 homolog 
 ppo-u.5   7467892   ribosome biogenesis protein WDR12 homolog 
 mtr-u.5   11445282   ribosome biogenesis protein WDR12 homolog 
 ghi-r.1   107888541   ribosome biogenesis protein WDR12 homolog 
 ghi-r.1   121221088   ribosome biogenesis protein WDR12 homolog 
 bna-r.1   106432596   ribosome biogenesis protein WDR12 homolog 
 bna-r.1   106424646   ribosome biogenesis protein WDR12 homolog 
 cit-r.1   102630163   ribosome biogenesis protein WDR12 homolog 
 osa-u.5   4343819   ribosome biogenesis protein WDR12 homolog 
 zma-u.5   100192696   uncharacterized LOC100192696 
 tae-r.2   123044296   ribosome biogenesis protein WDR12 homolog 
 tae-r.2   123188035   ribosome biogenesis protein WDR12 homolog 
 tae-r.2   123052172   ribosome biogenesis protein WDR12 homolog 
 hvu-r.1   123412876   uncharacterized LOC123412876 
 hvu-r.1   123425422   ribosome biogenesis protein WDR12 homolog 
 sbi-r.1   8060649   ribosome biogenesis protein WDR12 homolog 
 bdi-r.1   100842829   ribosome biogenesis protein WDR12 homolog 
 cre-r.1   CHLRE_07g349850v5   uncharacterized protein 
 cre-r.1   CHLRE_17g710100v5   uncharacterized protein 

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Top 50 coexpressed genes to 102580335 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102580335 (sot-r.1 coexpression data)

CoexMap"102580335"


sotLOC102580335 | Entrez gene ID : 102580335    
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 3 3 1 1 1 2 2 1 1 1 3 2 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042254 [list] [network] ribosome biogenesis  (234 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006359638.1 [sequence] [blastp]
XP_006359639.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_006359638.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_006359639.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_006359638.1)
other 6,  chlo 3  (predict for XP_006359639.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102580335
sot-r.1
for
102587196
sly-u.5
for
101261678
nta-r.1
for
107787040
nta-r.1
for
107809177
ath-u.5
for
AT5G15550
gma-u.5
for
100819142
gma-u.5
for
100818682
gma-u.5
for
100811859
bra-r.6
for
103856143
bra-r.6
for
103850990
bra-r.6
for
103846403
vvi-u.5
for
100265290
ppo-u.5
for
7467892
mtr-u.5
for
11445282
ghi-r.1
for
107888541
ghi-r.1
for
121221088
bna-r.1
for
106432596
bna-r.1
for
106424646
cit-r.1
for
102630163
osa-u.5
for
4343819
zma-u.5
for
100192696
tae-r.2
for
123044296
tae-r.2
for
123188035
tae-r.2
for
123052172
hvu-r.1
for
123412876
hvu-r.1
for
123425422
sbi-r.1
for
8060649
bdi-r.1
for
100842829
cre-r.1
for
CHLRE_07g349850v5
cre-r.1
for
CHLRE_17g710100v5


Ortholog ID: 5173
Species sot sot sly nta nta ath gma gma gma bra bra bra vvi ppo mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu hvu sbi bdi cre cre
Symbol LOC102580335 LOC102587196 LOC101261678 LOC107787040 LOC107809177 AT5G15550 LOC100819142 LOC100811859 LOC100789690 LOC103856143 LOC103850990 LOC103846403 LOC100265290 LOC7467892 LOC11445282 LOC107888541 LOC121221088 LOC106432596 LOC106424646 LOC106372165 LOC102630163 LOC4343819 LOC100192696 LOC123044296 LOC123188035 LOC123052172 LOC123412876 LOC123425422 LOC8060649 LOC100842829 CHLRE_07g349850v5 CHLRE_17g710100v5
Function* ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog Transducin/WD40 repeat-like superfamily protein ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog uncharacterized LOC100192696 ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog uncharacterized LOC123412876 ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma00190 Oxidative phosphorylation 2
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra04626 Plant-pathogen interaction 2
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00520 Amino sugar and nucleotide sugar metabolism 6
cre01250 Biosynthesis of nucleotide sugars 6
cre00541 Biosynthesis of various nucleotide sugars 4
cre01240 Biosynthesis of cofactors 4
cre04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102580335 102587196 101261678 107787040 107809177 831408 100819142 100811859 100789690 103856143 103850990 103846403 100265290 7467892 11445282 107888541 121221088 106432596 106424646 106372165 102630163 4343819 100192696 123044296 123188035 123052172 123412876 123425422 8060649 100842829 5718056 5717141
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