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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT5G15550   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100819142   ribosome biogenesis protein WDR12 homolog 
 gma-u.5   100818682   ribosome biogenesis protein WDR12 homolog 
 gma-u.5   100811859   ribosome biogenesis protein WDR12 homolog 
 vvi-u.5   100265290   ribosome biogenesis protein WDR12 homolog 
 ppo-u.5   7467892   ribosome biogenesis protein WDR12 homolog 
 mtr-u.5   11445282   ribosome biogenesis protein WDR12 homolog 
 sly-u.5   101261678   ribosome biogenesis protein WDR12 homolog 
 osa-u.5   4343819   ribosome biogenesis protein WDR12 homolog 
 zma-u.5   100192696   uncharacterized LOC100192696 

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Top 50 coexpressed genes to AT5G15550 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G15550 (ath-u.5 coexpression data)

CoexMap"831408"


athAT5G15550 | Entrez gene ID : 831408      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001332618.1 [sequence] [blastp]
NP_197059.1 [sequence] [blastp]
NP_974784.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_plas 2,  mito 1,  cysk 1,  nucl_plas 1  (predict for NP_001332618.1)
cyto 4,  nucl 2,  cyto_plas 2,  mito 1,  cysk 1,  nucl_plas 1  (predict for NP_197059.1)
nucl 3,  cyto 3,  cyto_nucl 3,  mito 2  (predict for NP_974784.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001332618.1)
other 7  (predict for NP_197059.1)
other 7  (predict for NP_974784.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G15550

.
ath-r.7
for
AT5G15550

.
ath-m.9
for
AT5G15550

.
ath-e.2
for
AT5G15550

.
ath-m.4.bio
for
AT5G15550

.
ath-m.4.hor
for
AT5G15550

.
ath-m.4.lig
for
AT5G15550

.
ath-m.4.str
for
AT5G15550

.
ath-m.4.tis
for
AT5G15550

.
gma-u.5
for
100819142

.
gma-u.5
for
100818682

.
gma-u.5
for
100811859

.
vvi-u.5
for
100265290

.
ppo-u.5
for
7467892

.
mtr-u.5
for
11445282

.
sly-u.5
for
101261678

.
osa-u.5
for
4343819

.
zma-u.5
for
100192696

.


Ortholog ID: 5173
Species ath gma gma osa zma bra bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit bdi nta nta
Symbol AT5G15550 LOC100811859 LOC100789690 LOC4343819 LOC100192696 LOC103846403 LOC103856143 LOC100265290 LOC7467892 LOC11445282 LOC123188035 LOC123052172 LOC123412876 LOC123425422 LOC107888541 LOC121221088 LOC106372165 LOC106424646 CHLRE_07g349850v5 CHLRE_17g710100v5 LOC8060649 LOC102587196 LOC102580335 LOC102630163 LOC100842829 LOC107787040 LOC107809177
Function* Transducin/WD40 repeat-like superfamily protein ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog uncharacterized LOC100192696 ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog uncharacterized LOC123412876 ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog uncharacterized protein uncharacterized protein ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog ribosome biogenesis protein WDR12 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma00190 Oxidative phosphorylation 2
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00520 Amino sugar and nucleotide sugar metabolism 6
cre01250 Biosynthesis of nucleotide sugars 6
cre00541 Biosynthesis of various nucleotide sugars 4
cre01240 Biosynthesis of cofactors 4
cre04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831408 100811859 100789690 4343819 100192696 103846403 103856143 100265290 7467892 11445282 123188035 123052172 123412876 123425422 107888541 121221088 106372165 106424646 5718056 5717141 8060649 102587196 102580335 102630163 100842829 107787040 107809177
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